RNA id: TU344187


Basic Information

Item Value
RNA id TU344187
length 2543
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G290566
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5801798 ~ 5804340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggtccaGACAACACATTTACAAAGACAGAACTAGTAGAATACATTCAGTGCATGCAAGAATTAATAATGTAGTCAGTCTTTATAAGGACATAGCAGGATTTATCAAAATGAAACCAGCATACTGAACAGTAAAGCAGGAATTAAAACTTATGTGCAGTTGAGAATAACAAGTGCTAACAGTAGTTTTACACTAGTGGTGGTTTGTGTTTAACTGAGAGAAATTGAGTATTGGGGATAATTAATTGCAAAGGCAAAGTTTTAATGGCACGACTAGCAGAAAATATTCCACTACTAGGAACTGTATTTTGTTCTAGCCTTTAGACAAATGTGTTTGTTGTATGACCACACAATTAGGGAAAATGTTGAAATGGTTAAACTGTTCCTACGGAGAAAGCTGAAAGACTCTGTGTGAACCGTGtgttgtagagttctacataTCAGAGATATGGAAGATACCTTTTGGAAGCAAAGAACTCTTAACTGTACAAAGAACCCTTGGGGAGCTGATTTTTCttagtgtatttattcattactcttatttttgttttttttttttttttttaaaaaactgctcTGAGCTTGAATGAGTGTAATGCATCATGGTTCAACATACCAGAGTGGaacaatattacaaataatgtCATGATGGACAGACACCCAGACCACTCATATTAGAAACTGACCCAAGGGAACTGAACAGTATCTTATTAGGTGTTTTGCTCATGGTTATTGTTGCTCTGTTGATCAAGAGGCCGATATCTGCAGCAGATAGCAATAGCAGCAGCTCCTTTATCTCCTCCGAACATCTGGATCACGCAGGTGTTTCCTCGTGTGTATGCCGCGTGAGTGACAGAACCATGTGACACCGCATTACACCCTGTAAGTGTCCAGGAGTCCTCACATGACACCTCCACCTAGGAGAGATTGGCACAGGTGAAGAGATATGGTTCACAGAAAAACTAGGATAGGCTCatggctgttaaaaaaaatttaaactagACACCAAAAGCTATTTTAGatgtgtcatattttatttagtattgcaggtgcactatatggccaaaagtttatggataCCTGACTTACacacatatgtgctttttgtaCATCCCTTTCCtccctttgctattataataacctccattcttccaagaaaggttttccactagactttggagcgtctctgtggggatttgtgctcattcagctacaagagcattactgagatcaggctgatgttggtgaggaggtctggggtgcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttctactccaaccttcacacagcatgtcttcatggggctcgctttgtgcacaggggcattgtcatgctggaacatgtttaggcctcttagttccagtgaaggaaaattgtaatgctacagcatacagacatTTGAGACAATTgtctgcttccaactttgtggcagcagtttgggggaAGACCTACATTtaggtatgatggtcaggtgtccacatacttatatagtgtatttctatCACTCAGATGAATTTTCAATCTGCTTCTCCTAGAGATGGTCATGATGGTGAGAGGGTCAGTCCAGACTTCACTATCCCTGGCCACAAAATTCAGCTACTTTCAGCATCTCTGTCCAATGAGACATACCTGGAACAGATCTACTGAGAGCCAACAAAGGGCACCCTTAAGAGATGCCCTGATTTCCATGAAAAATTGTAGGGAAGTGTTAACAATACCAGCCTAACATTGTCCAGTGCCATTACCATTTCTGGCTGAATTCCATTCAACTCTGCATCCTTGCTATTAAAAAGGTTTCACACTACCATAGTAACTTGAGCCACAAGAGATCAACAATCAGCAATATCTGTAGTAGAGGGCAATGCTTCCCCACACATATTTAGCACAGCTAACATCTCATTAAGGTCTCATCTACGTCTGTTTGCCAGAACATATTTGAGAccatctgttttgtttttttccctaaatgcTTTTGCTTCTGGAGTTGCTTTTGCTGCAGCCTTTCTGGCTCTCCTTTACAGAGTGAGCTCCCCTGGTTCAATCAATTGTCTTCACCTTGATGGCTTCTCTCATGACTGGTGTCCACCATTACAGGCACCGACAGCCTTCTGGCCACTGTTTCTCAACTGAGGACTTGAACATGGTCCTTTCAAACTTAACATCCctcacattatatattatatactgatTCAGTCATGCAGGTTTCTGTTCTAAAACATCAGGAGGATCCGGCCATTTCCATCCATaaaggccactcaggtgcttgttcccTCCCTTATCATTTTGACACTGGAGTACTGCAACTCACGCCTGGCAGGTCTAGCCCTGCACTCCATCTGACCCTTGCAACTGATCAAGACTTTTTTCCAATCtccccaagttctcccacaccaccccattgctgtgcTCCCTCCACTGGTTTACTGTAGCTGCTTACTCCCCTACACAGCCAAAAACCAAGCAACCCAAAGGGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344180 lncRNA upstream 67498 5732731 ~ 5734300 (+) True G290562
TU344031 lncRNA upstream 146111 5647377 ~ 5655687 (+) True G290419
TU344029 lncRNA upstream 202791 5544118 ~ 5599007 (+) True G290417
XR_004580164.1 lncRNA upstream 213303 5579818 ~ 5588495 (+) True LOC117599803
XR_003404604.2 lncRNA upstream 494896 5302630 ~ 5306902 (+) True LOC113545370
TU344188 lncRNA downstream 336 5804676 ~ 5805588 (+) True G290567
TU344190 lncRNA downstream 2666 5807006 ~ 5807916 (+) True G290569
XR_004580161.1 lncRNA downstream 11562 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA downstream 11569 5815909 ~ 5819066 (+) True LOC117599801
TU344338 lncRNA downstream 331612 6135952 ~ 6160040 (+) False b4galt6
XM_026944585.2 mRNA upstream 105 5735474 ~ 5801693 (+) False usp24
XM_026944586.2 mRNA upstream 105 5735474 ~ 5801693 (+) False usp24
XM_026944339.1 mRNA upstream 226228 5542956 ~ 5575570 (+) True plpp3
XM_026944340.1 mRNA upstream 226818 5542956 ~ 5574980 (+) False plpp3
XM_034313904.1 mRNA upstream 281165 5505839 ~ 5520633 (+) True LOC113545193
XM_034313451.1 mRNA downstream 39693 5844033 ~ 5856556 (+) False dhcr24
XM_026944360.2 mRNA downstream 39693 5844033 ~ 5856556 (+) True dhcr24
XM_026944357.2 mRNA downstream 39694 5844034 ~ 5856556 (+) False dhcr24
XM_026944354.2 mRNA downstream 59251 5863591 ~ 5868013 (+) False si:ch211-121a2.4
XM_034313792.1 mRNA downstream 59455 5863795 ~ 5868013 (+) True si:ch211-121a2.4
XR_004580141.1 other upstream 105 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 822398 4941951 ~ 4979400 (+) False dnm3a
XR_004580099.1 other upstream 822398 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 822943 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other upstream 827737 4941951 ~ 4974061 (+) False dnm3a
XR_004580167.1 other downstream 1208402 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1785028 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 2078878 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 2080305 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 2083188 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile