RNA id: XM_026944686.2


Basic Information

Item Value
RNA id XM_026944686.2
length 2622
RNA type mRNA
GC content 0.45
exon number 9
gene id b4galt6
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6135920 ~ 6160040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGTAGAGTGTGCGGATTCCCCCCCAGGGTGCAGTGGAGCTAGCGGTCACACCTTCCGGATATACCGCCTTCTCGTTTCATTCTTTACTTGAACTCTTTTTAAACCTGTTATTTTAGTCAGTTTTAGTGTCGGGAACATATTTGTAGACAGTATTTTCGGTGTTGTGTTTGAGaaagcagaggaggaggaggagaaagaggaggagtaGAAGTTCTCGGCTCATTTCCTCCTCCTCACCCACTTCATATGAAAACATGGTGCATAGGCAGGTGCGGATTTGATTTCACATTATTCGCTCGTTTTCTGCTCCCTAACCCCACCATGAGCCATGTACAGTGTTTGCGGATTATCTGTGGACTGATTTAACATCTGCTTTTGCTAActgtgaaatttttttcttcctttttttgggGTCAGTCTGGAATTTTCTTGGTTTCAGTTGGCGCTTTAGCTTAGCATTATCGCTGCATCCCTTTTCTACCGGCCCGAAACTACACACAGGCCACAGCGATGCGGACTTTACTACAGCCTTAATTTCtctggggaagaaaaaaaaaaaaaaccatttcgGTTTAGTGAAGGAAAGGAGCTTTACATATTTTATGGACGTGACGGATAGCTAGTAGCCGCTTCTCAGAGCAAGGGGAAAAATGCTGAATTCGAGGCGGCTGTTGCGGCTTTCCAACCGCTCCTTCTTggccttcatttttttcttctccatgtCTACGACCTGTCTCTACTTCATTTATGTGGCCCCTGGAATAGCCAACACATACTTCTTCATGGTGCAGGCTCAGGGTATAATGTTACGTGATAACGTGCGGACGATTGGCCAGATAATCAGATCATACACCAATAAGAACAGCACTCTGAATGGCACAGATTATCCTGATGGGAACAACTCCAGCGAATATTTTGCTCAACCAACTACATACCTCCCTGAGAATTTCACCTATGCCCAGAACTTGCCCTGCCCTGAACGATTACCTTCTATGAAGGGTCCTATGGAAGTAAATATGACCGAGGTTCCTATAGAGGAGGTGGAACTGCAGCTTAGACAGCTGGGCATTCAGTTTGGGGGACACTGGAAGCCCAAGGACTGCAAACCACGCTGGAAGGTGGCTATTCTGATCCCCTTTAGGAATCGTCACGAACATCTTCCCATTCTGTTTCAGCACCTTGCTCCCATGCTCCAACGGCAGCGCTTACAGTTTGCATTTTATGTAATTGAGCAGGCAGGTACGCAGCCTTTTAACCGAGCCATGCTTTTTAACGTGGGTTTCAAGGAGGCAATGAAAGACCTGGCCTGGGACTGTGTGGTTTTTCACGATGTCGATCATATCCCTGAAAATGACCGGAATTATTACGGCTGCGGGCAGATGCCTCGTCACTTCGCCACAAAGCTCGACAAGTACATGTACCTtttgcCCTACAGTGAGTTCTTTGGAGGAGTGAGTGGGCTTACAGCAAAGCAGTTCCGCAAGATCAATGGTTTTCCCAATGCATTCTGGGGCTGGGGAGGGGAGGATGATGACCTCTGGAACAGGGTGCACTTCACTGGCTTGAATGTGACCAGACCTGAAGGAGATATTGGTAAATACAAGTCAATTCCCCATCACCACCGAGGAGAAGTGCAGTTCCTGGGAAGgtaCAAGTTGCTGAGGTATTCTAAAGAAAGGCAATATTTGGATGGCCTAAATAATCTCCAGTATTCTCCGGAAATCTCTTTAAGTAGTCTGTATAAGAACATCACTGTTAACCTGAGCCCTGAGCTTGCCCCCATAGCGGAGTACTGACACCTgtctctccatcctctccacCTGGCCATCAGTACCTGAAGACGACCGACCCAGCATCGTGGAGAAGAGTGTGGTCTGAACATCGCATACGGCCACCAAGTAACCTTAAACCCAAGAGACAAAAGGTTAAAGGCCCGAATACTAAAATGATTGTGCGTGTGTGAAGTCATACCTATGTTTTTGTGAGCGTGTGCGTCCCAATGCATGTCTCTGTTTATGCGGCTTTAGCTACTCAAATCACATCATGCTAcgaaaaaaaaggaggaaggaGAAATTGGGGTGTGTCAGTGTCAACTATTCAAATGTTTACTGCGAAGCCTTAACTGATTTTCATAGGCTGTTATCACTCTGAGTGTCGGTTCTCATCCATGCCAACAATGTAGACTGCTCAGTTTTACAACTCAACAGCAACGTAAATGCCAATAGCTATTTTATGGCACGTTTTGTATCATATTGTAGTATTTTAATGCATATGATGAtttatgtatgtactgtaaatggtcttttttttggccttccttatttattattattatttttttttagtttcttgaGATGTACTTTTGAGCACTCCAgtggtgtgtgtaatgtgagcgTCACGTTTTCTTTTGTGGGCTGTGAGTGCACGAAGGATCACGACTGCTCACTTGATCCTGTAATGTCATACATCATTCCAGTGCACATACTCTTACTTTGGCAGCTAACTGTCTTTTCATTAACCCTCTACTCTGTCTTTCCTTATACAAATGGACGCTTCAACTTAAGGACTAAAGACAAATGAAATTGGGATGAGTGGTCTATTAAACAAAACACCAATATCA

Function

GO:

id name namespace
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0008489 UDP-galactose molecular_function

KEGG:

id description
K07553 B4GALT6; beta-1,4-galactosyltransferase 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580161.1 lncRNA upstream 316854 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA upstream 316854 5815909 ~ 5819066 (+) True LOC117599801
TU344190 lncRNA upstream 328004 5807006 ~ 5807916 (+) True G290569
TU344188 lncRNA upstream 330332 5804676 ~ 5805588 (+) True G290567
TU344187 lncRNA upstream 331580 5801798 ~ 5804340 (+) True G290566
TU344375 lncRNA downstream 80950 6237714 ~ 6237916 (+) True G290699
TU344584 lncRNA downstream 185499 6342263 ~ 6342540 (+) True G290863
TU344600 lncRNA downstream 265908 6422672 ~ 6422966 (+) True G290879
TU344666 lncRNA downstream 557163 6713927 ~ 6727514 (+) True G290935
TU344782 lncRNA downstream 677643 6834407 ~ 6834698 (+) True G291037
XM_026944682.2 mRNA upstream 8018 6090426 ~ 6127902 (+) True trappc8
XM_026944683.2 mRNA upstream 8018 6090426 ~ 6127902 (+) False trappc8
XM_026944684.2 mRNA upstream 8018 6090426 ~ 6127902 (+) False trappc8
XM_026944685.2 mRNA upstream 8018 6090426 ~ 6127902 (+) False trappc8
XM_026944687.2 mRNA upstream 60875 6068607 ~ 6075045 (+) True mcm3l
XM_026944489.2 mRNA downstream 57977 6214741 ~ 6230552 (+) True dsc2l
XM_026944591.2 mRNA downstream 304964 6461728 ~ 6504131 (+) True cdh2
XM_026944583.2 mRNA downstream 466163 6622927 ~ 6629974 (+) True aqp4
XM_026944352.2 mRNA downstream 484203 6640967 ~ 6660584 (+) False kctd1
XM_026944351.2 mRNA downstream 492619 6649383 ~ 6660584 (+) True kctd1
XR_004580141.1 other upstream 334227 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 1156520 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 855978 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1432604 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 1726454 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 1727881 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 1730764 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile