RNA id: TU344584


Basic Information

Item Value
RNA id TU344584
length 278
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G290863
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6342263 ~ 6342540 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGTGTTGGCAGGAACCGAGGCTCTTTCTTGGTGCAGTGCTTCCTTCACGGGTGTCGTGCTCCTTGGGAGGTGGTTGTGTGAGTGCACTGGGTGTGTGTATTAATTGCAGAAAGTGAATTGTTCCATTCGAGAATAAGAGCCTGTCCGTGTCTAACTGTCATTGTTAAGAGATGCAATCTCAGATGTTTGGGTGCatagtgtgaatgagtgaatgaacatAGTGTTGCCTTTTAACATTGTAATTCTTCAGttgaaataaaagatttttatatgGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344375 lncRNA upstream 104347 6237714 ~ 6237916 (+) True G290699
TU344338 lncRNA upstream 182223 6135952 ~ 6160040 (+) False b4galt6
XR_004580161.1 lncRNA upstream 523197 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA upstream 523197 5815909 ~ 5819066 (+) True LOC117599801
TU344190 lncRNA upstream 534347 5807006 ~ 5807916 (+) True G290569
TU344600 lncRNA downstream 80132 6422672 ~ 6422966 (+) True G290879
TU344666 lncRNA downstream 371387 6713927 ~ 6727514 (+) True G290935
TU344782 lncRNA downstream 491867 6834407 ~ 6834698 (+) True G291037
XR_004580109.1 lncRNA downstream 587829 6930369 ~ 6933860 (+) False LOC117599731
XR_004580108.1 lncRNA downstream 587835 6930375 ~ 6933860 (+) False LOC117599731
XM_026944489.2 mRNA upstream 111711 6214741 ~ 6230552 (+) True dsc2l
XM_026944686.2 mRNA upstream 185499 6135920 ~ 6156764 (+) True b4galt6
XM_026944683.2 mRNA upstream 214361 6090426 ~ 6127902 (+) False trappc8
XM_026944591.2 mRNA downstream 119188 6461728 ~ 6504131 (+) True cdh2
XM_026944583.2 mRNA downstream 280387 6622927 ~ 6629974 (+) True aqp4
XM_026944352.2 mRNA downstream 298427 6640967 ~ 6660584 (+) False kctd1
XM_026944351.2 mRNA downstream 306843 6649383 ~ 6660584 (+) True kctd1
XM_026944412.2 mRNA downstream 319340 6661880 ~ 6676354 (+) True taf4b
XR_004580141.1 other upstream 540570 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 1362863 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 670202 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1246828 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 1540678 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 1542105 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 1544988 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile