RNA id: TU344600



Basic Information


Item Value
RNA id TU344600
length 295
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G290879
representative True

Chromosome Information


Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6422672 ~ 6422966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


atttgcttCTTGACGCGTTGGATACAGGGTTTTCGGACATGTCTTTCAGCgcatgtttgttttctttttgttattttggttGTTGTACTTGTCTTTTCTTTaggtttagtttttgtttttctttatactGTTCAGTTTGTttggtgtgtattttgttctgtttaaactTGTTTTAGTATGTACATTTCATGTAcattcgtttgtttgtttatatttgctgTTTGATGCTTGTATTCATTTgttgtgtctttttgttttagtgtttggtatttattttgttgtatttggttttgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU344584 lncRNA upstream 80132 6342263 ~ 6342540 (+) True G290863
TU344375 lncRNA upstream 184756 6237714 ~ 6237916 (+) True G290699
TU344338 lncRNA upstream 262632 6135952 ~ 6160040 (+) False b4galt6
XR_004580161.1 lncRNA upstream 603606 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA upstream 603606 5815909 ~ 5819066 (+) True LOC117599801
TU344666 lncRNA downstream 290961 6713927 ~ 6727514 (+) True G290935
TU344782 lncRNA downstream 411441 6834407 ~ 6834698 (+) True G291037
XR_004580109.1 lncRNA downstream 507403 6930369 ~ 6933860 (+) False LOC117599731
XR_004580108.1 lncRNA downstream 507409 6930375 ~ 6933860 (+) False LOC117599731
XR_004580107.1 lncRNA downstream 507412 6930378 ~ 6933860 (+) True LOC117599731
XM_026944489.2 mRNA upstream 192120 6214741 ~ 6230552 (+) True dsc2l
XM_026944686.2 mRNA upstream 265908 6135920 ~ 6156764 (+) True b4galt6
XM_026944683.2 mRNA upstream 294770 6090426 ~ 6127902 (+) False trappc8
XM_026944591.2 mRNA downstream 38762 6461728 ~ 6504131 (+) True cdh2
XM_026944583.2 mRNA downstream 199961 6622927 ~ 6629974 (+) True aqp4
XM_026944352.2 mRNA downstream 218001 6640967 ~ 6660584 (+) False kctd1
XM_026944351.2 mRNA downstream 226417 6649383 ~ 6660584 (+) True kctd1
XM_026944412.2 mRNA downstream 238914 6661880 ~ 6676354 (+) True taf4b
XR_004580141.1 other upstream 620979 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 1443272 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 589776 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1166402 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 1460252 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 1461679 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 1464562 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile