Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU345443 |
| length | 881 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 1 |
| gene id | G291581 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 7665129 ~ 7666009 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404600.2 | lncRNA | upstream | 50149 | 7610487 ~ 7614980 (+) | True | LOC113545343 |
| TU345246 | lncRNA | upstream | 143006 | 7521924 ~ 7522123 (+) | True | G291434 |
| TU345235 | lncRNA | upstream | 144271 | 7489308 ~ 7520858 (+) | True | G291423 |
| TU345188 | lncRNA | upstream | 260024 | 7404428 ~ 7405105 (+) | True | G291380 |
| TU345097 | lncRNA | upstream | 403018 | 7261050 ~ 7262111 (+) | True | G291300 |
| TU345444 | lncRNA | downstream | 910 | 7666919 ~ 7667805 (+) | True | G291582 |
| TU345535 | lncRNA | downstream | 111620 | 7777629 ~ 7782008 (+) | False | atp5mpl |
| TU345543 | lncRNA | downstream | 167321 | 7833330 ~ 7837080 (+) | False | G291644 |
| TU345545 | lncRNA | downstream | 167321 | 7833330 ~ 7837080 (+) | True | G291644 |
| XR_004580121.1 | lncRNA | downstream | 279943 | 7945952 ~ 7948031 (+) | True | LOC117599748 |
| XM_026944579.2 | mRNA | upstream | 26025 | 7636185 ~ 7639104 (+) | True | six1b |
| XM_026944346.2 | mRNA | upstream | 35207 | 7623221 ~ 7629922 (+) | False | six4b |
| XM_026944345.2 | mRNA | upstream | 35207 | 7623222 ~ 7629922 (+) | True | six4b |
| XM_026944338.2 | mRNA | upstream | 162691 | 7478282 ~ 7502438 (+) | True | rhoj |
| XM_026944424.2 | mRNA | upstream | 308215 | 7348155 ~ 7356914 (+) | True | chrna2b |
| XM_026944474.2 | mRNA | downstream | 58297 | 7724306 ~ 7767694 (+) | True | rtn1b |
| XM_026944475.2 | mRNA | downstream | 90887 | 7756896 ~ 7766704 (+) | False | rtn1b |
| XM_026944647.2 | mRNA | downstream | 108483 | 7774492 ~ 7776361 (+) | True | rd3l |
| XM_026944390.2 | mRNA | downstream | 111588 | 7777597 ~ 7781997 (+) | True | atp5mpl |
| XM_026944452.2 | mRNA | downstream | 119413 | 7785422 ~ 7832026 (+) | True | ppp1r13bb |
| trnac-gca_25 | other | upstream | 75690 | 7589368 ~ 7589439 (+) | True | trnac-gca_25 |
| XR_004580167.1 | other | upstream | 645443 | 7012742 ~ 7019686 (+) | False | tdh |
| XR_004580141.1 | other | upstream | 1863436 | 5735473 ~ 5801693 (+) | True | usp24 |
| XR_004580099.1 | other | upstream | 2685729 | 4941952 ~ 4979400 (+) | False | dnm3a |
| XR_004580100.1 | other | upstream | 2691068 | 4941951 ~ 4974061 (+) | False | dnm3a |
| trnaa-cgc_5 | other | downstream | 217209 | 7883218 ~ 7883289 (+) | True | trnaa-cgc_5 |
| trnaa-cgc_6 | other | downstream | 218636 | 7884645 ~ 7884716 (+) | True | trnaa-cgc_6 |
| trnaa-ugc_17 | other | downstream | 221519 | 7887528 ~ 7887599 (+) | True | trnaa-ugc_17 |
| trnaa-ugc_18 | other | downstream | 222000 | 7888009 ~ 7888080 (+) | True | trnaa-ugc_18 |
| trnaa-cgc_7 | other | downstream | 222756 | 7888765 ~ 7888836 (+) | True | trnaa-cgc_7 |
