RNA id: TU345545


Basic Information

Item Value
RNA id TU345545
length 2145
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G291644
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7833330 ~ 7837080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATGGGCCAAAGAGACTTTATTTCAGGTGTTAAAGAGCCATCCTCAAGACGCTGGAGGTACAAAATCCTTCGGACTGATGGAAGACTCGTCTAACTTTTAGTGTCACTAACATGGGCAGAGTGAGCTCCTTGATGTGATTAACATTACTGGTTTGGAGGAAAGGAGAGCTGCTGAAGGCAGGAGGAGGAGTCAATTTGGGATTATGATTGGGTCATAAAGCAGTGTTCACTTCTGCTCAGGCATCAGGTCATCGATTGACTGGCCAGCTTCCAGACACTTCTCCATTTCGATGAGAAGCTTGACACCATCTACAACCATCTGTACCAGCTCCACCTCAGAGAAGCCCAGCCGGTCAGCATTGGAGATGTCAAAGATGCCACCCACTGCAGCAGTGTCTACTCCACCTAGACAGGGGAACATGGATGATTGTTACCAGAGAACCACATGGTAGATACATTTTGGTTATTACATGGTACAAATCAAGTCTTCATAATTAACGCAGTGGAGGGAATCCCAAGGAATTCAGTTACAGTCGATTCGATTCGTGTTCAAGTCCTTCTTAAACTTAGAGTTTACAATTAACATTCAAGAGCATCACTTTGCAATTAGTGTACGTGTAGCTGCAGGTTGTATAACGTATTTGTATCTTGTACCTGTTCCACGTTTCTGAAGCCTCAGCTTCTTGAGGATCTCGCCAAACTTCTCATGTTTGCTCAGGTTTGGAAGCTTAACGTGGACACCACCACGCAGCCCTGTCCCCAGGTTAGAAGGGCAGGTGAGTATGTAGCCCAGGTGCTCACTCCACATGAATTCATGGTCCTTCTCTTTGAAGAGAGATTCAATCTACAAGACACACGCAACACCatgttttacaatttaaaataggCTTATCCACATTGCATCTCCAAGTTTATCCATCTTTAGTTGCACCAACCTTTGTGAGCCCTGTGCAGAAACGAGTAAAGACTTCCTTCATGTTGCCACCCTTCTGCATGGAGATGACACGGAGGTGGTCTTCTTCATTCACCCAGACCAGGAAGGTCTTGTCATCATTGTGCCTTAGGGAAGTAAAAAAACCAAGGTGTTTAGAAGTAATCATATCCCCAATTCAACCAGTCATTAATTGGATTGCAAGAATTAAAATATGATCAATATTTGCAATTGTCTACAAAATTCACTAATATAATTTAGTTCAATGCCAAGGAAACACCAAAAGCTCACTTACCAGATCCCCCTGGCATCGGGCCAATCACGAGCCATCCCAGAGGCCAACAGCAGTGGGGACACTGGCTtgtcaaacaggaagtgatcatcaatcagctgctgctgctcctcctctgTCATGTTCTTCAGGGCATAgtattttcctttaaattcaCCGTCGAGACTACTCAAACCTGTATAGTGAAGCAACAAACAGCTGCCTAAGGCACCATTTCATTTATGATTCCATAAATAATGGATCACAAATGGCTCAAGATGGAAAGTATGATTATTTGGAAGCCATACACCGACCTTCAACAGCCAGATTTTCAATGGCACGCCTCTCACCACGGCTGCAGTGAGGGGGCAGGGAGAAGCCACGAATGCTCCTGCCAGTTCTTACTCTGGAGCTCAACACATAGTTGGGATCAAGGTCATCTCCACCCCTGAAGGTTGTCTGGGTTCAGGTCGGTCTTGTGCTTGTCTGTGGGCTTGTAGCCTCCATGGCGGTCTTCGATGACTGGGTCCAGAAGATCTTTAAACACCTCATATGTCTCCTCATCACCAGCAACACAGCCCACAGTCATGATGAATGGATGGCCTGGGTAAGCACCTTGGCCATGTGGTTGTTGTGCTGGCTGAGGTCGGGGTACTCCTGCTCGGCCGTGTAGTTCATCTTCATCTTGTTGTGGGTGTTGCCGAAAGGCATGGCTGCTCTGCGCTTTAGTCTACTTTCTTTGGGGGAAAATGAAAACAACGCTTCCTTTAGTCCACAAACAAGCACACCGACGCTGATTATGGTCTCCAGAAATAAGCGGCTTTGCCTGTTTTTATACGGCGCCGGAGCtttgctctgattggctgctatTTGAGTCCATTCACTCTATTGGAGCTCGAGCGCAGCATCCAGCGAGAGCGCGCGCGGATCACGTGACccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345535 lncRNA upstream 51322 7777629 ~ 7782008 (+) False atp5mpl
TU345444 lncRNA upstream 165525 7666919 ~ 7667805 (+) True G291582
TU345443 lncRNA upstream 167321 7665129 ~ 7666009 (+) True G291581
XR_003404600.2 lncRNA upstream 218350 7610487 ~ 7614980 (+) True LOC113545343
TU345246 lncRNA upstream 311207 7521924 ~ 7522123 (+) True G291434
XR_004580121.1 lncRNA downstream 108872 7945952 ~ 7948031 (+) True LOC117599748
TU345697 lncRNA downstream 288941 8126021 ~ 8127898 (+) True G291769
TU345853 lncRNA downstream 472162 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 627757 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 633867 8470947 ~ 8473728 (+) True G291976
XM_026944452.2 mRNA upstream 1304 7785422 ~ 7832026 (+) True ppp1r13bb
XM_026944508.2 mRNA downstream 48713 7885793 ~ 7945812 (+) True brf1b
XM_026944507.2 mRNA downstream 48713 7885793 ~ 7945812 (+) False brf1b
XM_026944614.2 mRNA downstream 206306 8043386 ~ 8074444 (+) True nudt14
XM_026944501.2 mRNA downstream 251607 8088687 ~ 8125663 (+) True jag2b
XM_026944502.2 mRNA downstream 251607 8088687 ~ 8125663 (+) False jag2b
trnac-gca_25 other upstream 243891 7589368 ~ 7589439 (+) True trnac-gca_25
XR_004580167.1 other upstream 813644 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 2031637 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2853930 4941952 ~ 4979400 (+) False dnm3a
XR_004580100.1 other upstream 2859269 4941951 ~ 4974061 (+) False dnm3a
trnaa-cgc_5 other downstream 46138 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 47565 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 50448 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 50929 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-cgc_7 other downstream 51685 7888765 ~ 7888836 (+) True trnaa-cgc_7

Expression Profile