RNA id: TU345691


Basic Information

Item Value
RNA id TU345691
length 2568
RNA type TUCP
GC content 0.34
exon number 3
gene id nudt14
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8043386 ~ 8074444 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTACATTTAGCCAGAGTAGGGCTGCGGTTGAGTTGTGTGTTTTGAGGAACACCggtgaggaagtgtgtgtgtgtgtatatatctaggctatatgtgtgtgtgtgtatgtgtgcgtgaaCCATGGAGCAGATTAATAATATTCAGGTGGTTCCGTGCACCAGCTCGAATTATCTGAAAGCGTTCACGGTGCATTATAGCCAGAATGGAACAAAGAAGTCGTGGGATTTTATGCAAACTCATGACAGGTCAGGAGTAGGAGTTACAGGAGCCAAGCAGACCATGTTCTATGCAGAGGTGTCAGACGAGAACCGCGTTGGTGAGGGTGGTGGACAACCTCAAGAAGGCGAGCTGATCGAAGTGGTCAAAGTGCCCTTGCACGAGGCCATGACTTTCGCCTATGACGAGAGCATCCCCAAAACCATGGGTGTCATTTTCAGCTTCATGTGGTTTCATAGCAACATGGCACCTAAGTATAAAATCTCCACTAATGTGTAATGGATGACAGCTACTTTTTCTTCCAACCTTGAAGCACCCTGTATGTAACTTTCTATTACTTTGTGTTCCTATTGAATTGAATACTGTGTTCTTATTTGCTTTCCTCTTTTCTTACTCTAATTATTGTCTATTTCAGACTTTTCCTCAAACAAATGTTAGCCATAATTCCTCCTTTTTTGTAGTAGATGAGTCCCAGAATAATAGTAATTGTGAGTTTGTTTCATGAAATGGTATACTTTGCTTTTAATGagtcagttattattattattttttaaatctgattgctCTTTAGAAATCTTATCATGGCTGGTAATACTATACATGTTAGAAGAGGAAGTTGTTCATATCATCTAAGGAGGTTTGGGGAAGTTTGATGAGCAAATCCAGATTTGCAGTTTTGTCAGAAAAGACAGGTATTTGTTACATGATTAATGTGCTACATAGCATAGCTAATGGGCAGTTTCCAACCTTGTATCTTAATTGTGCAAAGAATAGCCAAGCATTTGCAGACATCTCAGGTCTAACACAAACTACAAAGCATTCAGGGTTAGAGGCAAAGCTCTTTCATCGATACTTAACATCAAGCCCGCAAGTCCTCATTTAAAATCGAAAAAGAAATAGGGTTTCTTCATTTGGGGTCTGCTGCTGTTAATACATGCACAAAAACAGTGTACATGATTCAAACAATCCcatgtttatcattttttcACTGATTTTGACATGCCATGAAGGCTTACTGCTAGTCCTGAATAGCTTTTTAGAAACCATTTGGTTTCAACAATCACTAATGGAGGTCCGTtataattgtaataaaacaaattttatagTAGAGCAAGTAATTTGGAGTGATTATCACTTGCACAGAGATTtcatctctgtgttttttttctagaattAGAAAGCTACTCTGGTATAattcttatatatttaatatctaataCTAGAGTAATCATGGTTTATAATGAGCACAGTATACAATTTACAATGACATCATAAATGTCTCTTCAATCATGGCAACTATCATTGTGTCTGTCTTGACCAATTAATACTTGAAGACCATACATAgggtttatttttcacatgctgTATCTGAGGTTTCTCTTTCCATCTGACCTTGTTaggtattttaatgtttatattgcTATTGCCTCACCTGTGATGATGATACTTATTACTACGCTATGCCTGTTTAGTTCATTTTCTGGGACGAAAAAAGGTCATAAGCCATTTGACACTGCAATCATCTATTTGACTGTTTTCAGCTATTTTAGATTttcaaatagaaaaaataactgTTAAAATGACTACTTCAACTACTGGATGGGTGTGAATTATTTTCATTGTATCTAAACAatcagtgttttgttgtttatgtGGCAACAAATACAAGTAAGCCATTTGAACATGTGAAGTATGAATCTAATTAAGAAGTACATTCCTTTATTTAAAGATATGCTATGTAAGATTTTGTTAAGGTTCTTTGTTAAGGTTTTTGtatatttcaaaaatacatttttatcagtAAATTTGCTTATTGATGGAATTTGTCTttgcaataaaaacaacataaatgtacaaaataaaaacatataattagaTAATGTAAGAATGCATAGTATACCTTTAATGAAGCTTCTGAATGGTACTATTTATGACTATTAACATTCATTGTTTTAGCATTATTACCTAAATATTATATGCTAAAGAAACACTGAATGCATGTTGACGAAAAGCTCAAGTTGTGTTCTAGAAAGCATAGTGATGTCTTCGTAAGCCTCTGCCCCTATCCTGTTTTTATGTGATTGTTGATTGTTTCCTACATGCTTTTACTTGAGAATAAAAATCAAATGCTACTGATACTGTACAGTAGTGGTTCTTTCTActtgattttaatgttaatgatataGAGAAAAGGtgtttacataaaaattgtatttgatTCTTTGtgtattggattttttttttccattaaatgtGTTCTATGCATTTGAATTATATATTGAATTGTGATGTCTTGCATGTGCTCCATGTGTATTTTAATCTGGATTGAGTGTACATAAATAAAGCTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580121.1 lncRNA upstream 95368 7945952 ~ 7948031 (+) True LOC117599748
TU345543 lncRNA upstream 206319 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 206319 7833330 ~ 7837080 (+) True G291644
TU345535 lncRNA upstream 261391 7777629 ~ 7782008 (+) False atp5mpl
TU345444 lncRNA upstream 375594 7666919 ~ 7667805 (+) True G291582
TU345697 lncRNA downstream 51584 8126021 ~ 8127898 (+) True G291769
TU345853 lncRNA downstream 234805 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 390400 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 396510 8470947 ~ 8473728 (+) True G291976
XR_004580077.1 lncRNA downstream 414532 8488969 ~ 8534500 (+) True LOC113545369
XM_026944508.2 mRNA upstream 97587 7885793 ~ 7945812 (+) True brf1b
XM_026944507.2 mRNA upstream 97587 7885793 ~ 7945812 (+) False brf1b
XM_026944452.2 mRNA upstream 211373 7785422 ~ 7832026 (+) True ppp1r13bb
XM_026944501.2 mRNA downstream 14250 8088687 ~ 8125663 (+) True jag2b
XM_026944502.2 mRNA downstream 14250 8088687 ~ 8125663 (+) False jag2b
XM_026944387.2 mRNA downstream 98725 8173162 ~ 8190581 (+) False esr2a
XM_026944385.2 mRNA downstream 98725 8173162 ~ 8190581 (+) False esr2a
XM_026944388.2 mRNA downstream 98727 8173164 ~ 8190581 (+) True esr2a
trnaa-cgc_7 other upstream 154563 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 155319 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 155800 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 158683 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-cgc_5 other upstream 160110 7883218 ~ 7883289 (+) True trnaa-cgc_5
TU345969 other downstream 414210 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 817231 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 919076 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 999591 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1829313 9903750 ~ 9950731 (+) True G293016

Expression Profile