RNA id: TU345697


Basic Information

Item Value
RNA id TU345697
length 1878
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G291769
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8126021 ~ 8127898 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATTTCTAATTTCTAACTTTGCTAAGGTTATAGTGTtggaacaaaataaagaaactctGGGCTGagttttataataaatcaaCTGTATCAAATAACCCTACTTGCCCTTGCTGCAGCCAGAGGTGAGCAGCAAGACAATCAATACAGGAACTGTCTTCTTCTTCCAGTCAGGACGGCCCTGGGAGGAAACAACCAATAGCATTAGCTCTCCTGTTCTCGGCTGACTACACGCAGACCAATGGGATCTTCTGGTTTCTTGTGGCTTCATCCATTCTGAATGTTTCATGAGGATCTGTATGATGATGCTGAGAGTTTGTTATGGTTTTGTCTCATGAGCTGCCACTAATGGGATGCTTCTCTGGTGGAATAATGGCATCAGGTTTCACATCTCAGAGGGGAGGGTTGAGGCAGTGTAGGTGTTTCTAATACTGTAATTTGCTTCATTTATGGTAGTACATCTAAACGAAGAGCTGGGAGAATTAACATAGAATACAGCAGGGTAATAAAGCAGTGAATAGACAGCTGATGAATAGGTGCAATAGTGCGCTTTTCCGACACAGTTATTAGCATTATGGGCTTGTGCTTAGCATATAATAAGACAGAGCATCATTTACAATGGCGTACAGAATTATTTGCacttttcatattcatttaaaaaaatatgtaaaattgtaaaacagTAGGAGAAACTATCTTCATTCTAAAAACTAATTATTCATTGAATCGTATCTtctctcaaaaatatatatgacaaattaaataattaaataagtaatatttaaaatacatgcaaacaaatagttatttttgaaaacattttttttttttttttgctcagtcCTCAGGAACTCATTTAACCATATCCTGTTCTCCTGGGGTTTAAATATGAGGTTACACATGTGTAAAATCCCTTTGTTATCCATTACTGTGGggggaaaaaccaaagaactttcaacacaaaagtaactgatggttgttgacttgcacaagtaaagtattttttttttaagcacaagCAGTTCAAAATACCTTTAAGCACAATTATGTTGATAAAAAGAATCACATGTCTAAAACAGATAAGTTTGTCACCTGACCCCTTGAGCACACTTAATTAAAAATTagagattaaaaattaattgattCTTGTGGTTGTTTCAAAAGTTTCCAAATAAACTATTAGTTGCTACTTTTATAACAATGAGAAAGAAGCCTTTCCTGAGAGCTTGTTAAAAAagcaacatctgaaattcaccAAGCATCATTAGAACTACAGTTGGCATAGTGTCTTGTGGTCAAATCAgaccaaaatcaaactttttggTCATTCACACCAGGTTTGTTGGGAAACGAGGGCTACATACAAGGCACCAAAACATCCACTGTACAGTTTGGTGGCGGTTTAGCTATATTTTTTGGACTATTTTGTGGCTGGTGGTTCAGGGGCTCTAGACTAATGCAATCATTTATTCTGCTAAGTACCAGGgtatttcagcccaaaacctggttCCCTCTTCCCTCTGCCTTAGATAGCACTTTCAATAAGATGAGGACCAAACATActtttaaaatcacagaaatggttaaacaaacaaaatcagtgGTTTCCAATTGTCTCTGGCCTTGAaccctactgaaaacctgtCTGAATCAAAAGGGGAAGTCTGCATTCACAAATGTAGTATGAAgaagcttaaaatgttctgcatgagGAGTGCACCAAGTACACTGTACAAGTGTTTTCagccttgttagacattacaggaataGACTCAgtgttattctctccagggcaAAATTGGACCACttaaacaaatctttttttgtgtgtgtgtatgtttggaaaaaggaaaacctttaaataaaactatacaatgCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580121.1 lncRNA upstream 177990 7945952 ~ 7948031 (+) True LOC117599748
TU345543 lncRNA upstream 288941 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 288941 7833330 ~ 7837080 (+) True G291644
TU345535 lncRNA upstream 344013 7777629 ~ 7782008 (+) False atp5mpl
TU345444 lncRNA upstream 458216 7666919 ~ 7667805 (+) True G291582
TU345853 lncRNA downstream 181344 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 336939 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 343049 8470947 ~ 8473728 (+) True G291976
XR_004580077.1 lncRNA downstream 361071 8488969 ~ 8534500 (+) True LOC113545369
XR_003404603.2 lncRNA downstream 361071 8488969 ~ 8534500 (+) False LOC113545369
XM_026944501.2 mRNA upstream 358 8088687 ~ 8125663 (+) True jag2b
XM_026944502.2 mRNA upstream 358 8088687 ~ 8125663 (+) False jag2b
XM_026944614.2 mRNA upstream 51577 8043386 ~ 8074444 (+) True nudt14
XM_026944508.2 mRNA upstream 180209 7885793 ~ 7945812 (+) True brf1b
XM_026944507.2 mRNA upstream 180209 7885793 ~ 7945812 (+) False brf1b
XM_026944387.2 mRNA downstream 45264 8173162 ~ 8190581 (+) False esr2a
XM_026944385.2 mRNA downstream 45264 8173162 ~ 8190581 (+) False esr2a
XM_026944388.2 mRNA downstream 45266 8173164 ~ 8190581 (+) True esr2a
XM_026944386.2 mRNA downstream 47613 8175511 ~ 8190581 (+) False esr2a
XM_034313589.1 mRNA downstream 168716 8296614 ~ 8305599 (+) False LOC113545195
TU345691 other upstream 51584 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 237185 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 237941 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 238422 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 241305 7884645 ~ 7884716 (+) True trnaa-cgc_6
TU345969 other downstream 360749 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 763770 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 865615 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 946130 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1775852 9903750 ~ 9950731 (+) True G293016

Expression Profile