RNA id: TU345951


Basic Information

Item Value
RNA id TU345951
length 201
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G291972
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8464837 ~ 8465037 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCACATCTGTAACACTGCAAACAAGCAATCAGCTCTCCCCTACTGCTTCTACTTCCCTTCTAACCACCAACgcacacattaacattaacacatggctaggcatgtgtgtgtgcacacatgccATGACCTTACCACAAAGTCATGTGACTTAgtattttgctataaaatacCCTCACCAGTGGATAGCTGTCCTTTTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345853 lncRNA upstream 143378 8309242 ~ 8321459 (+) True G291907
TU345697 lncRNA upstream 336939 8126021 ~ 8127898 (+) True G291769
XR_004580121.1 lncRNA upstream 516806 7945952 ~ 7948031 (+) True LOC117599748
TU345543 lncRNA upstream 627757 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 627757 7833330 ~ 7837080 (+) True G291644
TU345955 lncRNA downstream 5910 8470947 ~ 8473728 (+) True G291976
XR_004580077.1 lncRNA downstream 23932 8488969 ~ 8534500 (+) True LOC113545369
XR_003404603.2 lncRNA downstream 23932 8488969 ~ 8534500 (+) False LOC113545369
TU345980 lncRNA downstream 45532 8510569 ~ 8510776 (+) True G291996
TU346061 lncRNA downstream 117913 8582950 ~ 8583477 (+) True G292072
XM_026944480.2 mRNA upstream 5109 8446316 ~ 8459728 (+) True clic5b
XM_034313589.1 mRNA upstream 159238 8296614 ~ 8305599 (+) False LOC113545195
XM_034313590.1 mRNA upstream 159238 8296614 ~ 8305599 (+) False LOC113545195
XM_026944397.2 mRNA upstream 164098 8296614 ~ 8300739 (+) True LOC113545195
XM_026944385.2 mRNA upstream 274256 8173162 ~ 8190581 (+) False esr2a
XM_026944651.2 mRNA downstream 84905 8549942 ~ 8557745 (+) True LOC113545337
XM_026944368.2 mRNA downstream 135374 8600411 ~ 8605983 (+) False wdcp
XM_026944369.2 mRNA downstream 135588 8600625 ~ 8605983 (+) True wdcp
XM_026944500.2 mRNA downstream 171413 8636450 ~ 8704985 (+) True atad2b
XM_034313707.1 mRNA downstream 171413 8636450 ~ 8701451 (+) False atad2b
TU345691 other upstream 390400 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 576001 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 576757 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 577238 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 580121 7884645 ~ 7884716 (+) True trnaa-cgc_6
TU345969 other downstream 23610 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 426631 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 528476 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 608991 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1438713 9903750 ~ 9950731 (+) True G293016

Expression Profile