RNA id: TU345955


Basic Information

Item Value
RNA id TU345955
length 2782
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G291976
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8470947 ~ 8473728 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGATAGTCATTCCCTGTAGCCATTGTTTAATAATGAAGGAAGACACAACATTAAGGCCAGaaacatgataaataaaacacatttgtgCAAGTGAAGCAAAGCATGCAAGCTCCAAAGAGAAATTAGCTCATAAAACATCCACCCACCTGACATTCCCACCCCTTCTGGTAGCTTAACCAGGGAggataaatattttacaaaaaaaaggaaaatgaataatAAGCACAAATGCAGTGGGGGTATATTTTCCTCATACAATAACTATCTACACTCACAATATTGTAAACACTTTGTAAACAAATTTTTATCTCTGCTGACTCTCACAGATACTCAGGTCCATACAATGACATTTATTTGACAGAACTGAACATGACTCACCAGAGATAACAAATGGTGTAAAATGTATGTCTCAACGTTCCTGGACAAAAATGTAGCTGTAAACTCTAAATACAAACAAAGAGTCAAATTAGAACATTTTCTGCTAACATCAGTACAGTTAAGCCCATTAAATTGAGTGGCATGATGATACAATTGAACTGCATAAATGACTAAGTGCTTTTCTTATCTCTCTGAGAAAACTGATCATTAGAAGCATGCTTGATAGCATTCCAAGGCTCATAAATACATACATCTGAATTTAACACACAGGGTACCCATTacactgtttctctgtttttgtgCAGTGTATAATATAAGGCACTGGATAGTAAAGCAAATGAAAAGATGAGTCTAAATGTTGCTGGCATGACTGCACAGAACATTGCATGAAAGGTAAGCAAAACCCcacatattattaaaaaaaataataataaaatcccaGTCTGAAATAAGTGAAATGGGTGGGCTTGGTTGTCGTACcataaaattacacatttttaaacttcAACAAGTGCTATTTAAGCTTACAGTAATACATTTACCTTGCTTTTTTGTTACTAAAATCAGAATTAGTACCAAAGTGGATGTAGAGCTGATTCATAGATTCTAGTCTGGGACTTAATTTTAGTCTTGGATCAAGAGCCACAGAGGTTACTGGATTACTTTAATaactaaaacaaataacaatGTGCAACTATAATCTCCAGCAAAAATACAGATTAGCTAAAAATGTACCTAAATTGTACTCAGAATTCAGACATATCAAAAATCACTGATGTTTCATGGGGAGGATTTTAGCTGCCATTACACTGAGCAATACCATATTGAGGATAAATGGTATTTTCACATCGTGATATAGTGTGTGTGGCTTTCATTAGGCTCCAGTAAACTGATCCAGTCTTCAGGTGGGTGTATAGCAGGCCCCTCAATGTGCAGAGGCTTTGGAAGTTTTCCTGTTAAAGCCCTTATTTCTGTCCAAATGGACTGCAACTGTTTTCAGCTTACACTAGGTTTAACGCCAACAGATATATCTGAGCATGATGCATACAAATTGACAGAAGTTTGGTAATAATCAATAAACAGTTTCCAAGAGAATGTGGCCTTTTTGGTTTGCAGTCAAACATGAAATGGCACCAGAGCTTTATGTACTGAGCAATTAAGCAATAATTCAGACTGGCAAGACTATCTGCTATATAAGAATAGAACTTTTCATAATGTACTATATGCAGATATAGGAAACCTCAGTATACGCAGAagaaaaatacttaaaaaaatggCTTAAGGCACAGAAAATGTATCTTTAAATTACATCAATTTCATTATTAACTTGAACATAGATGCATTACAAAAATATTCCGTCTATGAATCAAGTTCAAAATACATTACTTAAGTTATGGCTTTATAACTTACAACTCAATATTTGTTCACCAAATATGCATAATTTAAATTacttaagttaaaaaaaagaaaaacaaatttggTTTGTAATATTCAATTGAAACCAACTGCTGCTCAGTGCTTTAAACTGCATGTAAAACCTAACGCATGTTAAGGCTAACTACCTTTTTTTGAAAGAGCTAACAAACCACTCATAGCTTTTTCTAACCATACTCATTTTATCTATAAGCTATTGGTTTCAGAGGAATGGATTTTGTATTACAGGTatacaaataacaataactgCCATgagagtttttatttaaatacttcCCTTTGAAGAACCTCGTTCCATAAATACTCCTCAAAAGTGACATTTTatgaagattaaaaataaacaaggcAAAAGAGAATGTCTCAGCAAGATAGGACAAGGGTCCTGGTACGGTTTGTGCTTTAAAACCATGTCTCTGGTTTGGAGTTCACCTGTCTGACAGGCACATggtcctgtttttttgtttgtttgtttgttttttttttctaattccaTCAATATGGCCGCCACACTCCTTCATCCATCCTCCCTGCTGGATTGAGCACAGTTGGAGAGTTGCTGTGGCTGCCGTCCTCCTCCACACCGCTCCCTCCATCAGCCTGCACGGGAAGACTGGCATTGACCAAGGAGGCACCTGTGGAGGCGCTAGTGCAGGTGGGCAGCATCCTGGAGGGTGAGCGGTCTCCCCCAGTTACCATAGAGAATTGGTAGGAGCCGGAGGAGGCCCCATAGTAGAGATAGGGGGTGCTGCTGCTCTGGAATGGTCCACTCTGGCTCTGAGTGGAGCCTGGGTATGGTGGGGGCAGGTATGTGTGGTAATGGGCACTGCCAAGCGACATGCCTGTGGTGACAGGGGTGGGCGTGTAGGTAAACGTTGCCGGGTAGTGCATCCGTGGGCTGGAGAATCGGCTCTCAGTGAGGGAGGAGAATCCGGGGAACTGGCGCTCAAACTGCCCAGGGAAAGGAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345951 lncRNA upstream 5910 8464837 ~ 8465037 (+) True G291972
TU345853 lncRNA upstream 149488 8309242 ~ 8321459 (+) True G291907
TU345697 lncRNA upstream 343049 8126021 ~ 8127898 (+) True G291769
XR_004580121.1 lncRNA upstream 522916 7945952 ~ 7948031 (+) True LOC117599748
TU345543 lncRNA upstream 633867 7833330 ~ 7837080 (+) False G291644
XR_004580077.1 lncRNA downstream 15241 8488969 ~ 8534500 (+) True LOC113545369
XR_003404603.2 lncRNA downstream 15241 8488969 ~ 8534500 (+) False LOC113545369
TU345980 lncRNA downstream 36841 8510569 ~ 8510776 (+) True G291996
TU346061 lncRNA downstream 109222 8582950 ~ 8583477 (+) True G292072
TU346063 lncRNA downstream 110491 8584219 ~ 8585902 (+) True G292074
XM_026944480.2 mRNA upstream 11219 8446316 ~ 8459728 (+) True clic5b
XM_034313589.1 mRNA upstream 165348 8296614 ~ 8305599 (+) False LOC113545195
XM_034313590.1 mRNA upstream 165348 8296614 ~ 8305599 (+) False LOC113545195
XM_026944397.2 mRNA upstream 170208 8296614 ~ 8300739 (+) True LOC113545195
XM_026944386.2 mRNA upstream 280366 8175511 ~ 8190581 (+) False esr2a
XM_026944651.2 mRNA downstream 76214 8549942 ~ 8557745 (+) True LOC113545337
XM_026944368.2 mRNA downstream 126683 8600411 ~ 8605983 (+) False wdcp
XM_026944369.2 mRNA downstream 126897 8600625 ~ 8605983 (+) True wdcp
XM_026944500.2 mRNA downstream 162722 8636450 ~ 8704985 (+) True atad2b
XM_034313707.1 mRNA downstream 162722 8636450 ~ 8701451 (+) False atad2b
TU345691 other upstream 396510 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 582111 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 582867 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 583348 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 586231 7884645 ~ 7884716 (+) True trnaa-cgc_6
TU345969 other downstream 14919 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 417940 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 519785 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 600300 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1430022 9903750 ~ 9950731 (+) True G293016

Expression Profile