Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU346061 |
| length | 528 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 1 |
| gene id | G292072 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 8582950 ~ 8583477 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004580077.1 | lncRNA | upstream | 48450 | 8488969 ~ 8534500 (+) | True | LOC113545369 |
| XR_003404603.2 | lncRNA | upstream | 48450 | 8488969 ~ 8534500 (+) | False | LOC113545369 |
| TU345980 | lncRNA | upstream | 72174 | 8510569 ~ 8510776 (+) | True | G291996 |
| TU345955 | lncRNA | upstream | 109222 | 8470947 ~ 8473728 (+) | True | G291976 |
| TU345951 | lncRNA | upstream | 117913 | 8464837 ~ 8465037 (+) | True | G291972 |
| TU346063 | lncRNA | downstream | 742 | 8584219 ~ 8585902 (+) | True | G292074 |
| TU346095 | lncRNA | downstream | 121577 | 8705054 ~ 8705244 (+) | True | G292102 |
| TU346720 | lncRNA | downstream | 825015 | 9408492 ~ 9408714 (+) | True | G292654 |
| TU346709 | lncRNA | downstream | 831074 | 9414551 ~ 9415576 (+) | True | G292643 |
| TU346871 | lncRNA | downstream | 970960 | 9554437 ~ 9554807 (+) | True | G292765 |
| XM_026944651.2 | mRNA | upstream | 25205 | 8549942 ~ 8557745 (+) | True | LOC113545337 |
| XM_026944480.2 | mRNA | upstream | 123222 | 8446316 ~ 8459728 (+) | True | clic5b |
| XM_034313589.1 | mRNA | upstream | 277351 | 8296614 ~ 8305599 (+) | False | LOC113545195 |
| XM_034313590.1 | mRNA | upstream | 277351 | 8296614 ~ 8305599 (+) | False | LOC113545195 |
| XM_026944397.2 | mRNA | upstream | 282211 | 8296614 ~ 8300739 (+) | True | LOC113545195 |
| XM_026944368.2 | mRNA | downstream | 16934 | 8600411 ~ 8605983 (+) | False | wdcp |
| XM_026944369.2 | mRNA | downstream | 17148 | 8600625 ~ 8605983 (+) | True | wdcp |
| XM_026944500.2 | mRNA | downstream | 52973 | 8636450 ~ 8704985 (+) | True | atad2b |
| XM_034313707.1 | mRNA | downstream | 52973 | 8636450 ~ 8701451 (+) | False | atad2b |
| XM_026944503.2 | mRNA | downstream | 356915 | 8940392 ~ 8947001 (+) | True | gzf1 |
| TU345969 | other | upstream | 73467 | 8488647 ~ 8509483 (+) | False | LOC113545369 |
| TU345691 | other | upstream | 508513 | 8043399 ~ 8074437 (+) | False | nudt14 |
| trnaa-cgc_7 | other | upstream | 694114 | 7888765 ~ 7888836 (+) | True | trnaa-cgc_7 |
| trnaa-ugc_18 | other | upstream | 694870 | 7888009 ~ 7888080 (+) | True | trnaa-ugc_18 |
| trnaa-ugc_17 | other | upstream | 695351 | 7887528 ~ 7887599 (+) | True | trnaa-ugc_17 |
| trnak-uuu_18 | other | downstream | 308191 | 8891668 ~ 8891740 (+) | True | trnak-uuu_18 |
| TU346212 | other | downstream | 410036 | 8993513 ~ 8996996 (+) | True | G292216 |
| XR_004580138.1 | other | downstream | 490551 | 9074028 ~ 9160901 (+) | False | LOC113545247 |
| TU347160 | other | downstream | 1320273 | 9903750 ~ 9950731 (+) | True | G293016 |
| TU347333 | other | downstream | 1575478 | 10158955 ~ 10161751 (+) | False | LOC117599798 |
