RNA id: TU346720


Basic Information

Item Value
RNA id TU346720
length 223
lncRNA type intronic
GC content 0.34
exon number 1
gene id G292654
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9408492 ~ 9408714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCATATGTATGTTTATACGTTTACATGTGTGGTTGTGCTTTGGGTTTATAACCGATTGTTAATGTCACTAAGCTACTGATTACACATATGGCATGTTCATACGTGAAATGTTTATTCATAAGAAGTATGTGGTCACACCATAGGTGAAATACCAGAAGCAAATTTGTTTGTTAGAGTACATACAACACTGTCGtgctatttttctattttgctTAGTTTGTG

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346095 lncRNA upstream 703248 8705054 ~ 8705244 (+) True G292102
TU346063 lncRNA upstream 822590 8584219 ~ 8585902 (+) True G292074
TU346061 lncRNA upstream 825015 8582950 ~ 8583477 (+) True G292072
XR_004580077.1 lncRNA upstream 873992 8488969 ~ 8534500 (+) True LOC113545369
TU346709 lncRNA downstream 5837 9414551 ~ 9415576 (+) True G292643
TU346871 lncRNA downstream 145723 9554437 ~ 9554807 (+) True G292765
TU346877 lncRNA downstream 178986 9587700 ~ 9587903 (+) True G292771
TU346862 lncRNA downstream 203274 9611988 ~ 9612612 (+) True G292756
TU346860 lncRNA downstream 204711 9613425 ~ 9616591 (+) True G292754
XM_026944406.2 mRNA upstream 22697 9384881 ~ 9385795 (+) True LOC113545203
XM_026944404.2 mRNA upstream 70132 9336792 ~ 9338360 (+) True LOC113545201
XM_026944364.2 mRNA upstream 143641 9258394 ~ 9264851 (+) True lamp5
XM_026944463.2 mRNA upstream 153243 9183432 ~ 9255249 (+) True LOC113545235
XM_026944464.2 mRNA upstream 153243 9183432 ~ 9255249 (+) False LOC113545235
XM_026944652.2 mRNA downstream 10396 9419110 ~ 9424569 (+) True LOC113545338
XM_026944653.2 mRNA downstream 10396 9419110 ~ 9424569 (+) False LOC113545338
XM_026944654.2 mRNA downstream 10396 9419110 ~ 9424212 (+) False LOC113545338
XM_026944656.2 mRNA downstream 10396 9419110 ~ 9424212 (+) False LOC113545338
XM_026944432.2 mRNA downstream 17731 9426445 ~ 9463533 (+) False evlb
XR_004580138.1 other upstream 247591 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 411496 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 516752 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 899009 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 1334055 8043399 ~ 8074437 (+) False nudt14
TU347160 other downstream 495036 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 750241 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 1610202 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 1735173 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 1736225 11144939 ~ 11145012 (+) True trnai-aau_2

Expression Profile