RNA id: TU346860


Basic Information

Item Value
RNA id TU346860
length 2711
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G292754
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9613425 ~ 9616591 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTGGATAAAGCTATCAAAATTGAAAGAAAAGCATATCTTTGGTCTGATCACCGGAAATAATGAATCATCTAAGAACACAGTAAACATGGTCTAGACATCAAGACAAAAAGTATGTCATATTTTCAGGTATCTTGTCAATACATATTTATGTAGATGGATATAGTTAGCTCTTTCTGATCCCTAACAATGAGATTTAAACTTGGTTAATACACATTAATGAACTGTTTTGGGGGGTAAACTATGATTCAGGATTATTACAACATTTTAGAATCCTAAAATATCTAACTTTATATACGACATTTTTCAGTGGAAATATTAAGCAATTGATGAAGTTAAATACACCTGAagtcattcatgaaattttcatCTTGTGGTGTAAAAAGGCTTTGAAATCAAACCCGGAAAATTGAGATATTAGTACGTGTGAATATCATTAAGAAAGGAATGATGCAACTGCTTAACAGCTGAACTGAGGAACTTTGGGTTTTGTTTAATGTGCTAAACCAAGCAAGAGATCATCATGCTGTATATAGAATTCTGAGGTTACGATTAAACAATCCTTCCACAAGGTACAACAGAAGAACTCACTGAATTAAAACAGGCTAAGACTGACCTAATACTGAAACCATTTTCTTCTCACTTTACTTGAACTGCTTCTGGGAATGTTGTCTacgaaaggaaaaaaataaataaataaatcaacttctATTCTATACTGACGATTTCAAGAAGGTGCACTTTCATTGTTGAACTggaatatgattattttttttatttttttcttcggCATAACAAATTGCTCTAAATAATACAACAAAgcatttattgtaatttattaaaacaaaaatcggCTTCTCTGACTGCAGCGTGCAGCTGTTGGTTATTGTATTTGCAGATCAGAATCCAGAGCACCATGAAAGATCCAGGTAACTAAAAGGTAGCAGGTTTAGTAAACACTTTTTGGGGTACAAGGTCAGAACAGAAATCAGGAATTGCTCACTTCAGCAAATGGCCCTTGTACTTGTTCCCTCACTGACACCATTACATGCATCTCTCCCTCTGTAATTTCTGCCCAGCTCTCATTCATGTTGGCTCATCTCTTGTGAAACACGTTTTGTTTGTGCttcccaagaaaaaaaaaagccaaacaatTTTAATACTCATTTACAATTGAGGCTCCAccccctcaaaaaaaaaaaaaaaaaaaaacactttatgtaATATTGAAAGACAATAAGTTGCATTTGAATGTAATATAATTCTAATAGTGCCAAAAGCAAACTTAAGAGCCAGCCAAAAGGATCAGTacataatataaaagaaaactgtTACAGGGCATGATCAAAATCAACAGAAACAGGATTATGCGCAAACTTCTTTTTGCCAATATTTGCAAGAGGAATTATTTGTTAAATGCttccattttatatttttctttctcatttaacttttttgctcatttttttaatctatctaTTTCTCTTGCACTGGCCAGTCCAACTGAGCAGTGCATTAAGATTTGTAATTTGAAGTGAGCCAGGTCAGGCCCTCATATAGTCCGTCACCTGTGGTAGCGCACGAAGGCTGCACATACCAATTCCTGTCTCGGATGCGGGTCAAGCCAAGCTTCTCTTGGATCTCATGTGGCTTCATTGCGTCCGGCAGATCTTGCTTGTTGGCAAATATTAAGATGATGGCGTCCCTCATCTCGCGGTCATTGATGATGCGGTGCAGCTCCTGTCTGGCCTCGTCGATGCGATCTCTGTCAGCGCAGTCCACCACAAAGATGAGCCCCTGTGTGCCTGTGTAGTAGTGCCGCCAAAGCGGTCGGATCTTGTCCTGACCTCCCACGTCCCACACGTTAAACTTCACATTCTTATATGTGACGGTTTCCACGTTGAAGCCCACGGTTGGAATGGTGGTGACCGACTGTCCCAGTTTGAGTTTGTAAAGGATGGTTGTCTTACCGGCCGCGTCAAGTCCAAGCATCAATATTCTCATCTCCTTGTTTCCAAAGATCTTTGAAAGCATTTTCCCCATCTTGTTGGTTGTGcatatattatgtttattaaggaGGAAAAGATCTAGGATTTTTGGTAACGTACCTTTGGTTAGGTTATGTGCTGCTGTAATACTTCAGGTGTAACACCACAATTCTTAGATACTGTAACAGACTGCAAAACTATTGCTTTGCAACAAAAAGTATGGCTCTTCTATGAGACAGAGGAGAACTTCTTCTGAGCTAGATCAATCTGCATACTTTAGAGGAATGAAAGATACTGGAACACCAAGTTAAGACCAGAGGGTGTGGATAAGCAGCCTTCCTGAACCTGTCTGGGTGTCCTGGTggctcaacaccttctgaaagACAGGTCCAGAAAAATCCACTTCTTAGCTCTTCAGACTGTCCGGCTGTCTCCGGTGCACAGTGCTGTAACTACTGTAGCTCTGTGTTTTACACTTTAAATAACCCAGCGGCCCACTCGCTGGCCCACAGCAGCCCCGACTTCCTCCTTGTGCGCCGGCTCTCCGCTCGCTTTAGCCACTCGGCACATTAAGCGCCCGGGATTCCCTTCAGGAGTTCATGGTGACCATCGTGCTCCTAATGGCGTAGCAGCAAACTGGAAGCCGAACAACCAGCCGAggagaaaactaaaaaaactcCAAAGGTCATTGATTCATCCGAGTTTCCGCTCTCCGTGTCTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346862 lncRNA upstream 813 9611988 ~ 9612612 (+) True G292756
TU346877 lncRNA upstream 25522 9587700 ~ 9587903 (+) True G292771
TU346871 lncRNA upstream 58618 9554437 ~ 9554807 (+) True G292765
TU346709 lncRNA upstream 197849 9414551 ~ 9415576 (+) True G292643
TU346720 lncRNA upstream 204711 9408492 ~ 9408714 (+) True G292654
TU347065 lncRNA downstream 251558 9868149 ~ 9868609 (+) True G292929
TU347253 lncRNA downstream 419860 10036451 ~ 10038355 (+) True G293095
TU347278 lncRNA downstream 447174 10063765 ~ 10064011 (+) True G293110
XR_004580103.1 lncRNA downstream 582258 10198849 ~ 10210998 (+) True LOC117599717
TU347561 lncRNA downstream 920373 10536964 ~ 10537640 (+) True G293350
XM_026944540.2 mRNA upstream 35867 9574351 ~ 9577558 (+) True LOC113545275
XM_026944522.2 mRNA upstream 61484 9542408 ~ 9551941 (+) True LOC113545265
XM_026944524.2 mRNA upstream 61484 9542408 ~ 9551941 (+) False LOC113545265
XM_026944530.2 mRNA upstream 108299 9495245 ~ 9505126 (+) True entpd5b
XM_026944434.2 mRNA upstream 139261 9463982 ~ 9474164 (+) False yy1b
XM_026944520.2 mRNA downstream 2239 9618830 ~ 9624850 (+) False prpf39
XM_026944519.2 mRNA downstream 2245 9618836 ~ 9626110 (+) True prpf39
XM_026944547.2 mRNA downstream 10987 9627578 ~ 9631109 (+) True faua
XM_026944552.2 mRNA downstream 51090 9667681 ~ 9672528 (+) False ypel5
XM_026944551.2 mRNA downstream 51101 9667692 ~ 9672528 (+) True ypel5
XR_004580138.1 other upstream 452524 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 616429 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 721685 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 1103942 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 1538988 8043399 ~ 8074437 (+) False nudt14
TU347160 other downstream 287159 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 542364 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 1402325 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 1527296 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 1528348 11144939 ~ 11145012 (+) True trnai-aau_2

Expression Profile