RNA id: TU346877


Basic Information

Item Value
RNA id TU346877
length 204
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G292771
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9587700 ~ 9587903 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttagtggttcaGGTTTTGTGGTAGCAATCAGATGGTGCGCTTTGAAGAAGGCCCTTGGATGGTGTCCTTTCTCAGTTCTAAGTTGCTTTGAATAAGAgtgcaaataaatgtaaatgtaaaaaaacaacaaaaaggagACACCATTTAATATTACGATATTATATACTATGGTATGAAATGCTAGCTCACAGGCATGTATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346871 lncRNA upstream 32893 9554437 ~ 9554807 (+) True G292765
TU346709 lncRNA upstream 172124 9414551 ~ 9415576 (+) True G292643
TU346720 lncRNA upstream 178986 9408492 ~ 9408714 (+) True G292654
TU346095 lncRNA upstream 882456 8705054 ~ 8705244 (+) True G292102
TU346063 lncRNA upstream 1001798 8584219 ~ 8585902 (+) True G292074
TU346862 lncRNA downstream 24085 9611988 ~ 9612612 (+) True G292756
TU346860 lncRNA downstream 25522 9613425 ~ 9616591 (+) True G292754
TU347065 lncRNA downstream 280246 9868149 ~ 9868609 (+) True G292929
TU347253 lncRNA downstream 448548 10036451 ~ 10038355 (+) True G293095
TU347278 lncRNA downstream 475862 10063765 ~ 10064011 (+) True G293110
XM_026944540.2 mRNA upstream 10142 9574351 ~ 9577558 (+) True LOC113545275
XM_026944522.2 mRNA upstream 35759 9542408 ~ 9551941 (+) True LOC113545265
XM_026944524.2 mRNA upstream 35759 9542408 ~ 9551941 (+) False LOC113545265
XM_026944530.2 mRNA upstream 82574 9495245 ~ 9505126 (+) True entpd5b
XM_026944433.2 mRNA upstream 113536 9463981 ~ 9474164 (+) True yy1b
XM_026944520.2 mRNA downstream 30927 9618830 ~ 9624850 (+) False prpf39
XM_026944519.2 mRNA downstream 30933 9618836 ~ 9626110 (+) True prpf39
XM_026944547.2 mRNA downstream 39675 9627578 ~ 9631109 (+) True faua
XM_026944552.2 mRNA downstream 79778 9667681 ~ 9672528 (+) False ypel5
XM_026944551.2 mRNA downstream 79789 9667692 ~ 9672528 (+) True ypel5
XR_004580138.1 other upstream 426799 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 590704 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 695960 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 1078217 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 1513263 8043399 ~ 8074437 (+) False nudt14
TU347160 other downstream 315847 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 571052 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 1431013 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 1555984 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 1557036 11144939 ~ 11145012 (+) True trnai-aau_2

Expression Profile