RNA id: TU347253


Basic Information

Item Value
RNA id TU347253
length 1905
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G293095
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10036451 ~ 10038355 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGACAGGAAaggaatttatttaacaaataatatatttcgagtattttaaaaaaatcgcAGATTTTGTACACAGTTAGGTTCCGTTTTGTATCATATAAATAAGATTAACATTTGGTTGAAAGTTGGTCCATCTAATtcttaatgaaataaattaatctaGTGATATAAAGTCCTACTGAGGCGAGTCCGGAAAAACGCAATCTCACACGCCTTTTCAGGCCTTGCAGTCCGGAGTTGCTTCAGCCTCCTGTACTCACCGCTCTTTGGCTCAAAGCTgtgcattaaattatttaaactggGATTGAAATGCAAGTCTGAGGGCCAAATTAAGTGTGCGTTTTGGCTCGTGTGATATTTGGTCAGAACTTGCTACAGTCGTAGACGAAAGTTCCCGAGGCCCGATACAGAGGCTGACTGGCAGAGAAAGGTGTCTGACAGCCTCCGTCGCTTCCGGCCGCCGGTGAGGAGTTGAGCGCGAGCCGCTGTGCCTCGAACGCCGCATGAAAGCTTGGTTGTTGTGTTCCGTAGCTCGCGCCTAGCTGCGCCACTTCTGCGCTCTGATTGAGGTACCACGGCGCGAGCCGACTCTGTTGCACGTGCTGGTTCTCTTGGCTCGAGCTCAGGGTCGCGTGAGAGGACGCGGCTGCGCTTGTTGCGCTCGTGTAATCCGGTAAGGCTTCGTTCCCGTGCCCGCGGTCACCAGCATACATGTCGCACTGGTAGACGGCCGGCTGGCCGCAGGGAGGACTGTAGTGCGCCGGCTGTGTTTGGGGCGAGTAAGTAAGAGGCACCGAGCTCGGTAAAGCAGCGCGCGAGGCGGGCAACTCGGCAGCCTGCGGCGGTGACCCACGTAGCCCTGCGATTATGTTATCCATGCTAAAGGCCTGCTGTGTGCTTTGCGTCTGTGGGCTCCCGTCGCACGCGGCCACACTGCTGCTGTCCGGGCTTTCGGTTTTAGTCACGGAACCGAGGGTTGGGGTGCCGGAGCGCGGGGGCGTGCAAGCTCCGTTCTCCGTCTTTATGTCCCGGAGTTTGACTGGCTGCTGAGCGTCGCGAGCCTGGGCCCGGGCCTCCTTGCCTTGGAGATCGCGCTCCTCTCTGTCCTTCAGTGCGTCCTTCTTCTTGAAGCGGCGCCGCCGACGCAGGAAGCTGCCGTTTTCGAACATGTTGTAAGAGTCCGGGTCGAGAGTCCAGTAGCTGCCTTTCCCCGGCTTCTTGTCGTCGCGCGGCACTTTGATGAAGCACTCGTTGAGCGACAGGTTGTGGCGAATGCTGTTCTGCCAGCCTTGCTTGTTCTCCCGATAAAACGGGAAGCGCTCCATGATGAATTGGTAGATCCCGTTCAGCGTGACCCTTTTATCCGCCGAATTTTGGATGGCCATCGTTATCAGTGCGATGTAGCTGTATGGAGGCTTGACCATCTCCTTGGGCTGTTGAGTGGCCGCGTAGGGGCCATAGGCGCGAGCCATGCCTCCGGGGTACTGCTCGTGCGCTGCGTGAGAGTACATGCTCATTGGCGCCGGGATGCCGGTATAGCCAGTGCCGTTGGCAGCCCGGTAGTACCCCTGCTCGCCCGCGATGTAGGGAACAACTCCCAGAGAACTGGGGCTGGACGCGGGGTAGCGCGCGTGCATTGTGCCCCTCACTTCACGGTACTAGGGAGCGGACTTGGCTAAAGTTCTCCCAGCTCTTCTCCGTATCGCGTTCTAGTTTTACTCAAATCATCCAAAGGCTCACAGTGTCCGCTCTTTCTTCAGttgttttggatttgctgtTTTTAGAAACCTGTAGTCAGTAGATAACCTGCGCGGGATTGTCAGTCGTGTGTTGCGTTCAAAAACCCTGAAACGTGTAGCAGTCATTGAAAAGAGACAAACTTATGAACTTCCCGCACTTTCCGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347065 lncRNA upstream 167842 9868149 ~ 9868609 (+) True G292929
TU346860 lncRNA upstream 419860 9613425 ~ 9616591 (+) True G292754
TU346862 lncRNA upstream 423839 9611988 ~ 9612612 (+) True G292756
TU346877 lncRNA upstream 448548 9587700 ~ 9587903 (+) True G292771
TU346871 lncRNA upstream 481644 9554437 ~ 9554807 (+) True G292765
TU347278 lncRNA downstream 25410 10063765 ~ 10064011 (+) True G293110
XR_004580103.1 lncRNA downstream 160494 10198849 ~ 10210998 (+) True LOC117599717
TU347561 lncRNA downstream 498609 10536964 ~ 10537640 (+) True G293350
TU347551 lncRNA downstream 513886 10552241 ~ 10553007 (+) True G293345
TU347592 lncRNA downstream 522442 10560797 ~ 10561016 (+) True G293380
XM_026944678.2 mRNA upstream 10527 9945790 ~ 10025924 (+) True gmds
XM_026944679.2 mRNA upstream 10527 9945790 ~ 10025924 (+) False gmds
XM_026944680.2 mRNA upstream 10527 9945791 ~ 10025924 (+) False gmds
XM_026944628.2 mRNA upstream 95056 9917365 ~ 9941395 (+) False mylk4b
XM_026944627.2 mRNA upstream 95056 9924503 ~ 9941395 (+) True mylk4b
XM_026944512.2 mRNA downstream 53014 10091369 ~ 10121300 (+) True exoc2
XM_026944413.2 mRNA downstream 98634 10136989 ~ 10140336 (+) True LOC113545207
XM_034313908.1 mRNA downstream 120672 10159027 ~ 10170739 (+) True LOC117599798
XM_034313648.1 mRNA downstream 132437 10170792 ~ 10186608 (+) False LOC117599727
XM_034313652.1 mRNA downstream 132437 10170792 ~ 10186608 (+) False LOC117599727
TU347160 other upstream 85720 9903750 ~ 9950731 (+) True G293016
XR_004580138.1 other upstream 875550 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 1039455 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 1144711 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 1526968 8488647 ~ 8509483 (+) False LOC113545369
TU347333 other downstream 120600 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 980561 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 1105532 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 1106584 11144939 ~ 11145012 (+) True trnai-aau_2
trnai-aau_3 other downstream 1107636 11145991 ~ 11146064 (+) True trnai-aau_3

Expression Profile