RNA id: TU347333


Basic Information

Item Value
RNA id TU347333
length 350
RNA type TUCP
GC content 0.47
exon number 3
gene id LOC117599798
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10158955 ~ 10170739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGAAATGATATAAagtcacacacactgaagaacACACATGACATTTGATCAGAAACCGGATCACTTGTGCAGTGCAGGAGCCGCGATTTTGCAAAATGGACTCTGGTTCAGTGGCAAACAACTACTTTGCCCTTCAGCTGTTCAGCAAGATCAAGGAAGGCAACAAATCCAACAATGTCTTCTACTCTCCTCTCAGCATCTCTTCTGCCTTGGCCATGGTGTCTCTAGGAGCTGCAGGCAACACAGCAGCTCAGATGGCTGAGGTCTTGTGCTTCAACAAACCCAAACCAGTGAACCCTAAGTCTGTTCAACCTGTTGCAGTCAACAGACACAACAGACTCAGAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347278 lncRNA upstream 94944 10063765 ~ 10064011 (+) True G293110
TU347253 lncRNA upstream 120600 10036451 ~ 10038355 (+) True G293095
TU347065 lncRNA upstream 290346 9868149 ~ 9868609 (+) True G292929
TU346860 lncRNA upstream 542364 9613425 ~ 9616591 (+) True G292754
TU346862 lncRNA upstream 546343 9611988 ~ 9612612 (+) True G292756
XR_004580103.1 lncRNA downstream 37098 10198849 ~ 10210998 (+) True LOC117599717
TU347561 lncRNA downstream 375213 10536964 ~ 10537640 (+) True G293350
TU347551 lncRNA downstream 390490 10552241 ~ 10553007 (+) True G293345
TU347592 lncRNA downstream 399046 10560797 ~ 10561016 (+) True G293380
TU347623 lncRNA downstream 447875 10609626 ~ 10609846 (+) True G293411
XM_026944413.2 mRNA upstream 18619 10136989 ~ 10140336 (+) True LOC113545207
XM_026944512.2 mRNA upstream 37655 10091369 ~ 10121300 (+) True exoc2
XM_026944678.2 mRNA upstream 133031 9945790 ~ 10025924 (+) True gmds
XM_026944679.2 mRNA upstream 133031 9945790 ~ 10025924 (+) False gmds
XM_026944680.2 mRNA upstream 133031 9945791 ~ 10025924 (+) False gmds
XM_034313648.1 mRNA downstream 9041 10170792 ~ 10186608 (+) False LOC117599727
XM_034313652.1 mRNA downstream 9041 10170792 ~ 10186608 (+) False LOC117599727
XM_034313651.1 mRNA downstream 9042 10170793 ~ 10177835 (+) False LOC117599727
XM_034313645.1 mRNA downstream 9165 10170916 ~ 10186791 (+) True LOC117599727
XM_034313647.1 mRNA downstream 9165 10170916 ~ 10186608 (+) False LOC117599727
TU347160 other upstream 208224 9903750 ~ 9950731 (+) True G293016
XR_004580138.1 other upstream 998054 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 1161959 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 1267215 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 1649472 8488647 ~ 8509483 (+) False LOC113545369
TU347771 other downstream 857165 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 982136 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 983188 11144939 ~ 11145012 (+) True trnai-aau_2
trnai-aau_3 other downstream 984240 11145991 ~ 11146064 (+) True trnai-aau_3
trnai-aau_4 other downstream 985283 11147034 ~ 11147107 (+) True trnai-aau_4

Expression Profile