RNA id: XM_034313908.1


Basic Information

Item Value
RNA id XM_034313908.1
length 490
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC117599798
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10158955 ~ 10170739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCAGGAGCCGCGGTAAGTGTACTGAAGTATTGCAGTGAGTATTCTGCAGTTATTGCGTTATCTCCAGCTGTCATTACACGGCTGTTTGTCAGGACGATAGTACATGCAGGTAGTTACCAAATTTTGCAAAATGGACTCTGGTTCAGTGGCAAACAACTACTTTGCCCTTCAGCTGTTCAGCAAGATCAAGGAAGGCAACAAATCCAACAATGTCTTCTACTCTCCTCTCAGCATCTCTTCTGCCTTGGCCATGGTGTCTCTAGGAGCTGCAGGCAACACAGCAGCTCAGATGGCTGAGGTCTTGTGCTTCAACAAACCCAAACCAGTGAACCCTAAGTCTGTTCAACCTGTTGCAGTCAACAGACACAACAGACTCAGAATCCAGGTGAAGGCAGAGGCAGGCTCAGGGGGTGAGGGAGAGCCCACTGAGCATCAGGAGCCAAATCAGACAGGTACAGATAGTTACGCGTTCGCGCACTACACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347278 lncRNA upstream 95016 10063765 ~ 10064011 (+) True G293110
TU347253 lncRNA upstream 120672 10036451 ~ 10038355 (+) True G293095
TU347065 lncRNA upstream 290418 9868149 ~ 9868609 (+) True G292929
TU346860 lncRNA upstream 542436 9613425 ~ 9616591 (+) True G292754
TU346862 lncRNA upstream 546415 9611988 ~ 9612612 (+) True G292756
XR_004580103.1 lncRNA downstream 28110 10198849 ~ 10210998 (+) True LOC117599717
TU347561 lncRNA downstream 366225 10536964 ~ 10537640 (+) True G293350
TU347551 lncRNA downstream 381502 10552241 ~ 10553007 (+) True G293345
TU347592 lncRNA downstream 390058 10560797 ~ 10561016 (+) True G293380
TU347623 lncRNA downstream 438887 10609626 ~ 10609846 (+) True G293411
XM_026944413.2 mRNA upstream 18691 10136989 ~ 10140336 (+) True LOC113545207
XM_026944512.2 mRNA upstream 37727 10091369 ~ 10121300 (+) True exoc2
XM_026944678.2 mRNA upstream 133103 9945790 ~ 10025924 (+) True gmds
XM_026944679.2 mRNA upstream 133103 9945790 ~ 10025924 (+) False gmds
XM_026944680.2 mRNA upstream 133103 9945791 ~ 10025924 (+) False gmds
XM_034313648.1 mRNA downstream 53 10170792 ~ 10186608 (+) False LOC117599727
XM_034313652.1 mRNA downstream 53 10170792 ~ 10186608 (+) False LOC117599727
XM_034313651.1 mRNA downstream 54 10170793 ~ 10177835 (+) False LOC117599727
XM_034313645.1 mRNA downstream 177 10170916 ~ 10186791 (+) True LOC117599727
XM_034313647.1 mRNA downstream 177 10170916 ~ 10186608 (+) False LOC117599727
TU347160 other upstream 208296 9903750 ~ 9950731 (+) True G293016
XR_004580138.1 other upstream 998126 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 1162031 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 1267287 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 1649544 8488647 ~ 8509483 (+) False LOC113545369
TU347771 other downstream 848177 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 973148 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 974200 11144939 ~ 11145012 (+) True trnai-aau_2
trnai-aau_3 other downstream 975252 11145991 ~ 11146064 (+) True trnai-aau_3
trnai-aau_4 other downstream 976295 11147034 ~ 11147107 (+) True trnai-aau_4

Expression Profile