RNA id: TU350095


Basic Information

Item Value
RNA id TU350095
length 2031
lncRNA type sense_over
GC content 0.36
exon number 1
gene id arid1b
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14240519 ~ 14304691 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgttcctTTTTTCAGTTCCGTTTTAACCAAAGTTGGCATCTGATAGATACTGTTTTAGTTTTCAAAATTTTTTGctcttaagatttttttttttttcattgtttgtgGCTGTTTCTGGTGGGACTTTGTTTATTTGGGgatgcacatttatttaaattgtgaGATGTGTTGTAGATAGAACTTCTCTTGCAatgtgttaaagaaaaaaaaaaaaacactgatttacTCAAGATATACATGTATCCAGCTCTAAAAAGCATTGTGCAATAGGGTGTAGATGGCTTGTTGGAGGGGAGATTACCAAATGTGAATGACTCTTTACCACAGGCAATATTCAAATCTGATAACCAGTATTGCACTGCGTAACCACACCAGTATATATGAGGGTAAAGTGAGAGCTGGTTTTTTAACTTACTCGCTTCCACCAGTATGACCATTAGACAGCAGGATCAACAGTCAGAAAACGGAACTCTAAAGCGCTTCAGTTACCACTTCTCTTCATTCAACTTATGGGCTgatttgtgtatatatgagcTGTATATTAAACAGgcccttttcactttttatttctccAAGAGATGTGGTATTATATAAAGTGATGGTAGTTGATGCTAATTATTAACAACagtttgaaaatgaaattttcatCGCCATCTTCTGTCGAGGGTAGTCTGCTGTTGTGTAGGACGTTCCTGCATGGACTGTACTACACACAATTCTGTAAAATGGATAGGAACAGGTCCCTCGAAAGGCCTTGGATGTCtggcttaaaaaataaaagacacagGCTCATCAAATTGTCAGTCGGTGTAACTGTAATCCAGCAAAATTTGAAGTTACCCAAAAGTGACTTGAGCAACAATTCCAATGAAAATGTACAACTCTGTGAACTTTTTTCATGCCATATGATTTGATGAACATTGTTTATTAGTATAAAGTCTTTATACTACATGTTCCACATGTTAAAGTAAATGTACATGAAATCTGGTTGAGCACTGTGAAGGTTGTTTTTGGGTgctttgtcttttcattttgaaacaaTAACTTTCAAAACTAATAGTAATACTGAAACTCTACACATCTTATCTCAGAAAGCAGGTTTACTATAGCACTGTGGTATCTTAATGTCAGTTTGGCAGAGTATAAAAGGTTGTGGGCGCTTGAGTGCATTAGTTGACTCATGCATCTGACTCAGTTCTTGAATGCTTTGAAAAATTACATAATGAGCTGAATCAGCTGTGCTGGAAAGAGAAAACAACTGAGCATTGGATGTCCAGAACTTTGCCAAACAAATGAATCATAGATAAATCACAGAATAACAGTACAATATTCCTAAATAATTTATGCTGGCAGTAAATTCAGATGTAGCTACGCTTCACCACCCGGCTGTTCTGACATCAGTGTTTCagacctttttattttaatgactttatGTTAATTACATTTGTGGAAGCAGTCACATGCTGCATTTCTGGAACATCTGAACAGTACTTCCTTTTTCACTTCTGGCCAAATGGGCTTTTCCACAAATAGCCTGATTTATTCTTCCAGTAAATATTTTGGGGAAAGTTTTTGTTTAAGACCAGTTACAAGGCTGATGTTTCTTGTCCCTCCAATGTGGCTTCCATCAAAACCCGACTCCCTACTTGAAACTGAGTTTAAAGTCCtggaatttatattttttctattaaaactTTTTGGATGTATATTTAACATAACACTCAGGTTTAGtttcatacaaacatttttaatatcttaCACCAGAGACTAGAACTTATGAAGGACCAGTTACTAAAATTCATTGTTTACAAAGGTCTGgttaagcaactaacatgactacCTGGTGACAGCAGTTACCTAACCATTAGTGGTATGTTCAAGGCTATAAAGACATAAAATTGATTTAACTGTGTTTTGGTTTGCACTGGTGCTTCATGttagcactttatttatttatttttttttacacaagcaaacttgaccatcacacccatatgtgttttttccccaaactgttgccccaAAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU350104 lncRNA upstream 42671 14259536 ~ 14259990 (+) True G295597
TU350090 lncRNA upstream 64952 14237487 ~ 14237709 (+) True G295590
TU349794 lncRNA upstream 283324 14017638 ~ 14019337 (+) True LOC113532127
TU349801 lncRNA upstream 286035 14016393 ~ 14016626 (+) True G295333
TU349780 lncRNA upstream 407864 13894449 ~ 13894797 (+) True G295315
TU350207 lncRNA downstream 77855 14382546 ~ 14382752 (+) True trnas-gcu_11
TU350290 lncRNA downstream 252038 14556729 ~ 14574795 (+) True G295766
TU350316 lncRNA downstream 322411 14627102 ~ 14631160 (+) True G295787
TU350355 lncRNA downstream 359402 14664093 ~ 14664381 (+) True G295818
TU350359 lncRNA downstream 360841 14665532 ~ 14665767 (+) True G295822
XM_026922756.2 mRNA upstream 71944 14221122 ~ 14230717 (+) True LOC113531833
XM_034313816.1 mRNA upstream 83232 14195317 ~ 14219429 (+) True LOC113532133
XM_026922921.2 mRNA upstream 140938 14109393 ~ 14161723 (+) True LOC113531931
XM_026922922.2 mRNA upstream 195439 14105151 ~ 14107222 (+) True LOC113531932
XM_034313442.1 mRNA upstream 258967 14032442 ~ 14043694 (+) True ndufaf7
XM_026923483.2 mRNA downstream 6525 14311216 ~ 14342712 (+) False zdhhc14
XM_026923482.2 mRNA downstream 6535 14311226 ~ 14342712 (+) False zdhhc14
XM_034313843.1 mRNA downstream 6555 14311246 ~ 14342712 (+) True zdhhc14
XM_034313844.1 mRNA downstream 6555 14311246 ~ 14342712 (+) False zdhhc14
XM_026923305.2 mRNA downstream 52589 14357280 ~ 14367279 (+) True galca
TU349793 other upstream 281977 14017638 ~ 14020684 (+) False LOC113532127
trnaf-gaa_29 other upstream 747714 13554875 ~ 13554947 (+) True trnaf-gaa_29
XR_004580084.1 other upstream 757023 13468727 ~ 13545638 (+) False col12a1b
XR_003403290.2 other upstream 2724068 11568737 ~ 11578593 (+) False pak6b
trnai-aau_16 other upstream 3141824 11160764 ~ 11160837 (+) True trnai-aau_16
trnas-gcu_7 other downstream 73332 14378023 ~ 14378104 (+) True trnas-gcu_7
trnas-gcu_8 other downstream 74087 14378778 ~ 14378859 (+) True trnas-gcu_8
trnas-gcu_9 other downstream 75802 14380493 ~ 14380574 (+) True trnas-gcu_9
trnas-gcu_11 other downstream 77847 14382538 ~ 14382619 (+) False trnas-gcu_11
trnas-gcu_13 other downstream 79615 14384306 ~ 14384387 (+) True trnas-gcu_13

Expression Profile