RNA id: trnas-gcu_11


Basic Information

Item Value
RNA id trnas-gcu_11
length 82
RNA type tRNA
GC content 0.47
exon number 1
gene id trnas-gcu_11
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14382538 ~ 14382752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACgcgtgggttcgaatcccatcCTCGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU350095 lncRNA upstream 77847 14302661 ~ 14304691 (+) False arid1b
TU350097 lncRNA upstream 78959 14302661 ~ 14303579 (+) False arid1b
TU350096 lncRNA upstream 78959 14302802 ~ 14303579 (+) False arid1b
TU350104 lncRNA upstream 122548 14259536 ~ 14259990 (+) True G295597
TU350090 lncRNA upstream 144829 14237487 ~ 14237709 (+) True G295590
TU350290 lncRNA downstream 174110 14556729 ~ 14574795 (+) True G295766
TU350316 lncRNA downstream 244483 14627102 ~ 14631160 (+) True G295787
TU350355 lncRNA downstream 281474 14664093 ~ 14664381 (+) True G295818
TU350359 lncRNA downstream 282913 14665532 ~ 14665767 (+) True G295822
TU350399 lncRNA downstream 335666 14718285 ~ 14719968 (+) True G295852
XM_026923391.2 mRNA upstream 6130 14367708 ~ 14376408 (+) True ak7a
XM_026923393.2 mRNA upstream 6458 14367708 ~ 14376080 (+) False ak7a
XM_026923305.2 mRNA upstream 15259 14357280 ~ 14367279 (+) True galca
XM_026923482.2 mRNA upstream 39826 14311226 ~ 14342712 (+) False zdhhc14
XM_026922943.2 mRNA downstream 20998 14403617 ~ 14421827 (+) False papola
XM_034313726.1 mRNA downstream 23951 14406570 ~ 14423172 (+) True papola
XM_026923152.2 mRNA downstream 214572 14597191 ~ 14620898 (+) True reps1
XM_026923153.2 mRNA downstream 214572 14597191 ~ 14620898 (+) False reps1
XM_026922601.2 mRNA downstream 263014 14645633 ~ 14659946 (+) True scara3
trnas-gcu_9 other upstream 1964 14380493 ~ 14380574 (+) True trnas-gcu_9
trnas-gcu_8 other upstream 3679 14378778 ~ 14378859 (+) True trnas-gcu_8
trnas-gcu_7 other upstream 4434 14378023 ~ 14378104 (+) True trnas-gcu_7
TU349793 other upstream 361854 14017638 ~ 14020684 (+) False LOC113532127
trnaf-gaa_29 other upstream 827591 13554875 ~ 13554947 (+) True trnaf-gaa_29
trnas-gcu_13 other downstream 1687 14384306 ~ 14384387 (+) True trnas-gcu_13
trnas-gcu_14 other downstream 2805 14385424 ~ 14385505 (+) True trnas-gcu_14
trnas-gcu_16 other downstream 4857 14387476 ~ 14387557 (+) True trnas-gcu_16
trnas-gcu_19 other downstream 14526 14397145 ~ 14397226 (+) True trnas-gcu_19
trnas-gcu_20 other downstream 15232 14397851 ~ 14397932 (+) True trnas-gcu_20