RNA id: XM_034313576.1


Basic Information

Item Value
RNA id XM_034313576.1
length 1975
RNA type mRNA
GC content 0.35
exon number 6
gene id LOC117599698
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20439620 ~ 20442292 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtcttttgtatttttagctACAGAAACATGAacgtaaataaatatttaagctCATTGAAGGCACGAAACTGGAGCTTAAGGAACTTCTAAAGGtaaatttgcattgtttattttgACTGTTAACAAAGTAGaaattaatgtcattaaaaaatatatttttggacCCAAAACATTGGCACTGACCAAAAAGCACTTCATTAAACTTCTTCTATCAGAGAGGTTCCAGCACACAGGACTGATAGAGCTCCAGTAGATCATATCTGTAAAGTCATGTGACTCATCACAGGATCAGAATAGACAAGAATTCACTGTGAGCTTCACATCTCCTTACAGCTAATGGACCAATCAAATCAGTCCACAGCTTCAAAACATCCAATCAGGCGTGAGTCTGGACCTGGTTTTCTACTGAACACACAAGTTCATTACCTCACTATCACTTTGTCTAAACAGGAACGATGATCACACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTGCACAGCTGtaaaaacttCTGACATCAAGGAGCTTCACGTGAAAACAGTAAAGCGTGGAGAAAATGTAACTATGGAGTGTGACATTAGCAGGGTCAAAGACAAAGATAAGGTAGTTTGGTACAGACAGAGTTTTGGAAAATTACCTCAGTTTTTAGCAAGACCATACAGGAGCAGTTTGGGCTACACATTTGCTGAGGGATTTAAAGATAGCTGCTTCAGTATTACTGTAAATGACCATAAGTTTGATCTCAACATTAATGAAACGAGAGAAGATGATGAAGGAGAATATTTCTGTGGAGAATTGGATGGAAGTGCACTAAAGTTCACATCTGGAACACGTCTGCAATTTGAAGgtaAAGAGATGAAACTCTGTCCTACACTTGGAACGGTTAACAAGAACACAGATTCTGTTACATCCCAGGGTTCAGACAGCAGCGATGGAAAAGgaAATGAACATTGGATTATTGCCTTAACAACCTCCATAATAATATCTCTTATTGTAATCGTGGTTCTGATtggagttttatttaaaaatcaaagaagAGgGGCTTCCAACAACCATCCAAATAACACAAATCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGCGCCatgaagataaaataaaataacaagttaaaataaaataaaaagaaatcaattcAGACCTGAAACACTTCTGCACAGTGTAACTACTTGTTGTCATTAGTCTTTCATTAAGTTTGAATAGTttctatttaaattatattttgaatattttctcaGCATTTTCTCGTATATCACCCTTGATTTAtagaacataaaaacatttatatgttttatgaTTCTAAATTGTATGCATCAAGGTTTCTGTATTGCCTAATCATTGTAGATTTGTAGTCAGTATACTGTATCTGGAAATATAATGCGTCTTATAcgtcttttacattttaaaacgtTTTAGTGCAAGAGGGCTGAATAAAAATATTCGACTGCAACATGAAATTAAGGTTCAGATACTAAATTTTTATACcagattaaaatgtatattaatgaCTGATAAAGTACTAATGTGttctttacattaaatattttttaatttttagaatTCTGATtgtatattgattataaaaatctgtaaaagcTGTATTACACCATTTTaacatcactgacatcatttTAAGTTAGTTACTGTAGCATCAGCTCCACCGTCAGCACTTCAGCCACTCACATTACGCCGTTCTCCTGCCTCCTGATCTTACTGCGCTCTAAtttcctgctcatttcctctGTGGATAGACTCAACACCAGTGCACTTTCCATTGATCTCTGCAAGGTTTTGTGACTTTTATTTTCCATctccatttgtttttttccccttttgccTCTTTCCTAAGCCCATTGTGTTTCTACATCCGTTCCCTGTTGATGTAGATCTGCTAATAAAAGTATTGCATCCACTCTCACTCCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353913 lncRNA downstream 9412 20429514 ~ 20430208 (-) True G298801
TU353905 lncRNA downstream 48903 20390134 ~ 20390717 (-) True G298794
TU353904 lncRNA downstream 49920 20389084 ~ 20389700 (-) False G298794
TU353886 lncRNA downstream 74124 20365285 ~ 20365496 (-) True trnah-gug_23
TU353863 lncRNA downstream 191705 20247235 ~ 20247915 (-) True G298758
TU353941 lncRNA upstream 49718 20492009 ~ 20501140 (-) True G298823
XR_004580093.1 lncRNA upstream 203098 20645389 ~ 20646391 (-) True LOC117599711
TU354012 lncRNA upstream 233752 20676043 ~ 20677510 (-) True G298878
TU354044 lncRNA upstream 263186 20705477 ~ 20714490 (-) False G298890
TU354043 lncRNA upstream 282653 20724944 ~ 20730010 (-) True G298890
XM_026911108.2 mRNA downstream 2146 20425285 ~ 20437474 (-) False LOC113524747
XM_026911106.2 mRNA downstream 2146 20425285 ~ 20437474 (-) False LOC113524747
XM_026911107.2 mRNA downstream 2146 20425285 ~ 20437474 (-) True LOC113524747
XM_026911126.2 mRNA downstream 36061 20392640 ~ 20403559 (-) True LOC113524770
XM_034313541.1 mRNA downstream 135873 20293412 ~ 20303747 (-) True gtf2a1
XM_034313606.1 mRNA upstream 124655 20566946 ~ 20575254 (-) True LOC113524741
XM_034313540.1 mRNA upstream 142376 20584667 ~ 20591786 (-) True LOC117599679
XM_034313535.1 mRNA upstream 151150 20593441 ~ 20599093 (-) False LOC113524753
XM_034313534.1 mRNA upstream 151153 20593444 ~ 20599093 (-) False LOC113524753
XM_034313536.1 mRNA upstream 151218 20593509 ~ 20611269 (-) True LOC113524753
trnae-uuc_16 other downstream 16038 20423511 ~ 20423582 (-) True trnae-uuc_16
trnae-uuc_15 other downstream 17694 20421855 ~ 20421926 (-) True trnae-uuc_15
trnae-uuc_14 other downstream 20259 20419290 ~ 20419361 (-) True trnae-uuc_14
trnah-gug_25 other downstream 60715 20378834 ~ 20378905 (-) True trnah-gug_25
trnae-uuc_13 other downstream 61244 20378305 ~ 20378376 (-) True trnae-uuc_13
TU354008 other upstream 213708 20655999 ~ 20664540 (-) True G298875
trnae-uuc_17 other upstream 308209 20750500 ~ 20750571 (-) True trnae-uuc_17
trnai-uau_9 other upstream 515340 20957631 ~ 20957723 (-) True trnai-uau_9
trnar-ucu_11 other upstream 517205 20959496 ~ 20959588 (-) True trnar-ucu_11
TU354232 other upstream 630635 21072926 ~ 21073676 (-) True G299022

Expression Profile