RNA id: TU353941


Basic Information

Item Value
RNA id TU353941
length 565
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G298823
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20492009 ~ 20501140 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCCAAAtatgtctttctgtttcttttacagGGTTCTTTGTGTTTTGGCTTTTTCTGCAGAGAGCAGTTCATTTGTTCCTAATACTTTTTTGTTCTGCATTCTTATAAATAgaggaatttttatttatatatttacttattttcatttgtttatttattttagatttttgttgttgttcttttctgattctctttgtttttcattctgcTCTCTCATACAGAGAGCAGTtcatttttctatatatatataaaaattgttGTATATTGCATTTTGctaattatatttacacacagttgCTGTCATTGTTGTTAAACAGTTTTTTCTTCCTGAGACTACAGGTTTTACATTTTCAGGCTCAACAGCTTTACCATCGGTGGAACTTTCAAAaatgcCACGGAAAGGAAAGAGATCTCAGGCTCAAAAACTGCGTTGGAGAAAGTTGAAACTGGAAGATGAACAGACCACTCTCCCCAGGGTTGACGAGGAAGAGTTTGGAGACAATAGCAGTCCTGTCTGGATGCAATTCTGCAAAATATCATCCAAAGCTAAGTGTTTAAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353913 lncRNA downstream 61801 20429514 ~ 20430208 (-) True G298801
TU353905 lncRNA downstream 101292 20390134 ~ 20390717 (-) True G298794
TU353904 lncRNA downstream 102309 20389084 ~ 20389700 (-) False G298794
TU353886 lncRNA downstream 126513 20365285 ~ 20365496 (-) True trnah-gug_23
TU353863 lncRNA downstream 244094 20247235 ~ 20247915 (-) True G298758
XR_004580093.1 lncRNA upstream 144249 20645389 ~ 20646391 (-) True LOC117599711
TU354012 lncRNA upstream 174903 20676043 ~ 20677510 (-) True G298878
TU354044 lncRNA upstream 204337 20705477 ~ 20714490 (-) False G298890
TU354043 lncRNA upstream 223804 20724944 ~ 20730010 (-) True G298890
TU354085 lncRNA upstream 253832 20754972 ~ 20838639 (-) False G298906
XM_034313575.1 mRNA downstream 49717 20439620 ~ 20442292 (-) True LOC117599698
XM_034313576.1 mRNA downstream 49718 20439620 ~ 20442291 (-) False LOC117599698
XM_026911108.2 mRNA downstream 54535 20425285 ~ 20437474 (-) False LOC113524747
XM_026911106.2 mRNA downstream 54535 20425285 ~ 20437474 (-) False LOC113524747
XM_026911107.2 mRNA downstream 54535 20425285 ~ 20437474 (-) True LOC113524747
XM_034313606.1 mRNA upstream 65806 20566946 ~ 20575254 (-) True LOC113524741
XM_034313540.1 mRNA upstream 83527 20584667 ~ 20591786 (-) True LOC117599679
XM_034313535.1 mRNA upstream 92301 20593441 ~ 20599093 (-) False LOC113524753
XM_034313534.1 mRNA upstream 92304 20593444 ~ 20599093 (-) False LOC113524753
XM_034313536.1 mRNA upstream 92369 20593509 ~ 20611269 (-) True LOC113524753
TU353922 other downstream 49921 20440866 ~ 20442088 (-) False LOC117599698
trnae-uuc_16 other downstream 68427 20423511 ~ 20423582 (-) True trnae-uuc_16
trnae-uuc_15 other downstream 70083 20421855 ~ 20421926 (-) True trnae-uuc_15
trnae-uuc_14 other downstream 72648 20419290 ~ 20419361 (-) True trnae-uuc_14
trnah-gug_25 other downstream 113104 20378834 ~ 20378905 (-) True trnah-gug_25
TU354008 other upstream 154859 20655999 ~ 20664540 (-) True G298875
trnae-uuc_17 other upstream 249360 20750500 ~ 20750571 (-) True trnae-uuc_17
trnai-uau_9 other upstream 456491 20957631 ~ 20957723 (-) True trnai-uau_9
trnar-ucu_11 other upstream 458356 20959496 ~ 20959588 (-) True trnar-ucu_11
TU354232 other upstream 571786 21072926 ~ 21073676 (-) True G299022

Expression Profile