RNA id: XR_003402597.2


Basic Information

Item Value
RNA id XR_003402597.2
length 627
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id LOC113524815
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21016662 ~ 21020147 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCCGCCCTTAAACGCAGAAAACAAATCTTATTGGGTTACGTAGCCTTCTGCTTGTTTCTAATTGGCTAATCTAAACGTCAATCATAACAACACGGCAGCAGGTTTTTTTATCTAATCGCATTAGCACGCAGCTAATTCACCGATTTATCACATTCTTTATCAGTTTTAAGTCATTTAACgagtgtatatttaatatttaacgctatattgctgtaaatttaaaaatgtcatatcaTATTTTAACCAGATTCAccttgatgatttttttaaataaatgtgcttcCGGTTATGAACGCTTTTAAATTTAACTTCCGGTTCACCTCCTACTTCATCCGGGTTATTTTACAGCTAATATCTCCTAAAGAGATGTCGAGTTGAACAGgtgaAAGTGCTGATGTATTCTTTATCGTCGCATTTCCAGCTGGATCTTTAGGCTTGAACACTGGAAAAACCCCACTGATGTacactttttaaagaaataaatgaaggtGATGAAGCTGGGAAGGAGATAAAGTTGATGGAGCATAAATGCACTCGCTGGAAAACAAAGTATGAAAATAATACcaataaaacaatcagttttcacacttttttttttcttcttcaattGTTTATCTTCCTGgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354114 lncRNA downstream 66590 20949842 ~ 20950072 (-) True G298934
XR_003402683.2 lncRNA downstream 69304 20932603 ~ 20947358 (-) True LOC113525588
TU354077 lncRNA downstream 128010 20833006 ~ 20888652 (-) True G298906
TU354086 lncRNA downstream 177872 20819372 ~ 20838790 (-) False G298906
TU354085 lncRNA downstream 178023 20754972 ~ 20838639 (-) False G298906
TU354211 lncRNA upstream 2095 21022242 ~ 21022860 (-) True G299005
TU354214 lncRNA upstream 3977 21024124 ~ 21029143 (-) True G299007
TU354228 lncRNA upstream 48567 21068714 ~ 21068938 (-) True G299018
TU354229 lncRNA upstream 50690 21070837 ~ 21071111 (-) True G299019
TU354239 lncRNA upstream 62374 21082521 ~ 21082826 (-) True G299026
XM_034313850.1 mRNA downstream 17588 20995801 ~ 20999074 (-) True LOC113525589
XM_034313849.1 mRNA downstream 18738 20995801 ~ 20997924 (-) False LOC113525589
XM_034313470.1 mRNA downstream 25991 20985188 ~ 20990671 (-) True LOC117595662
XM_026911095.2 mRNA downstream 266522 20742070 ~ 20750140 (-) False LOC113524743
XM_026911096.2 mRNA downstream 266522 20742070 ~ 20750140 (-) False LOC113524743
XM_034313675.1 mRNA upstream 73330 21093477 ~ 21112429 (-) True LOC113524825
XM_034313609.1 mRNA upstream 99801 21119948 ~ 21126084 (-) True LOC117599722
XM_034313610.1 mRNA upstream 115430 21135577 ~ 21171717 (-) True LOC113524826
XM_034313693.1 mRNA upstream 169276 21189423 ~ 21197043 (-) True LOC113524822
XM_034313691.1 mRNA upstream 199739 21219886 ~ 21247185 (-) True kcnk10a
trnar-ucu_11 other downstream 57074 20959496 ~ 20959588 (-) True trnar-ucu_11
trnai-uau_9 other downstream 58939 20957631 ~ 20957723 (-) True trnai-uau_9
trnae-uuc_17 other downstream 266091 20750500 ~ 20750571 (-) True trnae-uuc_17
TU354008 other downstream 352122 20655999 ~ 20664540 (-) True G298875
TU353922 other downstream 574574 20440866 ~ 20442088 (-) False LOC117599698
TU354232 other upstream 52779 21072926 ~ 21073676 (-) True G299022
trnae-uuc_18 other upstream 190035 21210182 ~ 21210253 (-) True trnae-uuc_18
trnav-uac_10 other upstream 712042 21732189 ~ 21732261 (-) True trnav-uac_10
TU354804 other upstream 951934 21972081 ~ 22067550 (-) False srsf5a
TU354827 other upstream 975967 21996114 ~ 22000833 (-) True G299449

Expression Profile