RNA id: TU354804


Basic Information

Item Value
RNA id TU354804
length 2364
RNA type TUCP
GC content 0.52
exon number 9
gene id srsf5a
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21972081 ~ 22067610 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCCTGTATCCTTCTTTGCTCGGACGCCATTTTGTCATTTCGACTAACAGCAGCGAGATCTCTTTCAGATTTTCACCATGAGCGGATGTCGTGTGTTTATCGGCCGTCTGAGCCCTCACGCCCGGGAGAGAGACGTGGAGAAGTTCTTCAAGGGTTATGGACGCATCCGGGAGATCAACCTGAAGAACGGCTTTGGCTTTGTGgagtttgATGACCACAGGGATGCGGACGACGCCGTGTACGAGTTAAACGGAAAGGAGCTTTGCAATGAGAGGGTGACCATCGAGCACGCTCGCTCCCGCCGTGGtcgaggaggtggaggaggagcaggcaGCCGCTTCTCTCCACGCTTCGGAGGCTACCGTCAATCACGCAGTGCAGGATCCAgGTATGGGCCTCCCGTGCGTACGGAGCACAGGATTGTCGTGGAGAATCTGTCGTCCCGTATCAGCTGGCAGGTGAGAGACGTGCACACACTCCATCCATCACTCTTTCCACCCTTtctcattagaaaaaaaactttttcaccTCGCTACAATACGAAGGCTAAAACCTAGAAGCCTGTTTTTTGTGGTAACTTTGTGAGTAATTCCTCTTGATGATAAATATGAATTtagtttataaatataaatgtttaatctaATCTGGTTATTTTTCTAACTGAGATCCGTCTCTTTAAACCTTTTCTTTAACAGCTGTGCTCTGGTATTCTGGTTTAATCGGAGTTGCATGCGCAGCCCGTGAGGTGCATAGCGCCCTCTGCTGGTTGTGTTCTGAATAGTGCTTCTCCCCATACGCAGTTGTAGCGCAGCATAGCCTTATGGGACATGGGTAGCCCCCCTGTGGAGGGTCTCTGGGGCCTCCAGGTTGCCCCCCACTCCACCCCGTTTGGGTCTTATTCTGGTCGTGGGGGGCACGCACACAGTCCTCTCGCTGAGTCTGGTGGGTCCGTGCTTATGGAGGCCGGAGGTCGTTTAAACCGCGTTGGTTCCGTTTGCTATTTGGACAAGTGGCTTCTTTGCTAATGTCTTCTGTGGTTTGGAACGGACCTGAAGGACCTGATGAGGAAAGTGGGAGACGTGACGTTCGTGGACGCTCACAGAGCCAACAAGAACGAGGGggtggtTGAGTTCGCCTCACACAGCGATATGAAGAACGCCATCGAGAAGCTGAACGGTACAGAACTGAACGGCCGCAAACTCAAACTGTATGAGGACCGAAAGAGGAGccgCAGCAGGAGTCGCTCTCGCAGCTCCTCCCGTTCCCGCTCTCGCTCACGCTCCAAATCTGCGAGTCGAAGCCGCAGCCGCGAGGACAAGCGCGAGAGCAAGCGTGAGAAACGCTCTCGCAGCCGCTCTCGCCCGGCCAGTCGCACGCCGGAGAAGAAAACATCAGCCAAGTCCGAGTCCCGCTCTCGCTCCCGCTCTCCGTCTCCCAGGAAACAGTCTCGCTCTCGCTCAGCGTCCACCGAGAGCCAGCACTGAGAGAGCgcgggggtgtgtgtgtgcgaagcGCAGGTaagtgggtgtgagtgtgtgtgcgctgaaggtggtgtgtgtgtgcgctgcggcgtagtgtgtgtgctgctgaagCGAGTGGTTTGTTGAAACCTGGAATCTGTGTGTAACTTGCAGGCCCTGTTCGTATATCTTTATCTTTACAGAGAGTGAACTTTATTAAccttttgatttttattttaattttttttatttgatttttctgTATCGAGCTTTATTAGATGTAAAGAAACTGTACGTGAGGTACAGAGATGTAGTCGATCAGCCGACACGCTCGGGGTCTGAGGCTTTTCTTTAATGTCCACTccacagtgtgtcagtgtgtgaagatttacacacacacacacacacacacacacacacttacactgtgTTGTAGCTCGGGTGGAGAGCTGAAGAATCGAACCTGACTCCGAGCACGACTCTGCCGATCCGCTACACCTGCAGGAGGAAGTGCGCgcttttgtgcttttgttatTGTAGTAGAgatgtcattaaataaaaacaggaccaggtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtggacctgtCTTATCTGCAGATGTATCCAGATGTGTCCCAAGTGCCTCATGTCTGTAGCTCTATGGTGGTCTGTGTGTGAGGGCAGGATGACAGAGAGACCTTGTTATCCAGGGGACGTGGCCTCAGCACCTTACACACCGCCCCCCAGAGGAGGCGGGGCACAGGGGGACTGAGCAGAATAAACACCCAGGGGTCGAGGATGGGGTTCATGGAGAGCAGCAGGAGAGCCAGTAGGTCCAGAGTCTGGTTCGTACTTAACGAGCTGATATACACACGGATCtgcacaaagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354776 lncRNA downstream 4685 21966356 ~ 21967396 (-) True G299446
TU354743 lncRNA downstream 80580 21890815 ~ 21891501 (-) False G299420
TU354744 lncRNA downstream 80580 21890815 ~ 21891501 (-) True G299420
TU354685 lncRNA downstream 154847 21808400 ~ 21817234 (-) True G299375
TU354665 lncRNA downstream 227311 21743179 ~ 21744770 (-) True G299366
XM_034313695.1 mRNA downstream 199406 21762566 ~ 21772675 (-) True kcnk5b
XM_034313696.1 mRNA downstream 199459 21762566 ~ 21772622 (-) False kcnk5b
XM_034313698.1 mRNA downstream 221095 21744936 ~ 21750986 (-) True nt5c1bb
XM_026911464.2 mRNA downstream 243667 21723735 ~ 21728414 (-) True LOC113525042
XM_034313700.1 mRNA downstream 244359 21723735 ~ 21727722 (-) False LOC113525042
XM_034313530.1 mRNA upstream 2378 22069928 ~ 22082320 (-) False LOC113541916
XM_034313529.1 mRNA upstream 2378 22069928 ~ 22082320 (-) False LOC113541916
XM_034313528.1 mRNA upstream 2378 22069928 ~ 22082320 (-) True LOC113541916
trnav-uac_10 other downstream 239820 21732189 ~ 21732261 (-) True trnav-uac_10
trnae-uuc_18 other downstream 761828 21210182 ~ 21210253 (-) True trnae-uuc_18
TU354232 other downstream 898405 21072926 ~ 21073676 (-) True G299022
trnar-ucu_11 other downstream 1012493 20959496 ~ 20959588 (-) True trnar-ucu_11
trnai-uau_9 other downstream 1014358 20957631 ~ 20957723 (-) True trnai-uau_9
TU354841 other upstream 2429 22069979 ~ 22074716 (-) False LOC113541916

Expression Profile