RNA id: XM_026910051.2


Basic Information

Item Value
RNA id XM_026910051.2
length 2844
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC113523954
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 120176 ~ 134264 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTAACTAGACGTATTTCCGTGGAAGTCTTTCTTCCAGTGAAAAAGCTTTCATGGAACATTTCCAGACAGAGTGTTATAAATATAAGAACAGAAATCCAGCTGGCTTCAGACTTCAGTCGAAGACATTACCAGACGACTTCATTTCTGAACATAGCACAGACTGCACAGAAACACCAGACATGGCATCAGGACCCATTGAACTGGCAGCTCTAGGAAGACCTCTGTTTCCCGGTATGCTGTATGATTGCCGCAAGGATTCCTTCATTCCAGGTGTTACTCTGTGGGATAAGCAATCACTGAGTGAAGATATGGACACTCGTTCAAAGCTCATGACAGATGTGAAGTTCAGTagctctgattctctctctagTAAGTCCAATCTCCTAGATGTAAGTGCTTCCCTGAAGGCCAGCTTTTTTGGGGGGCTGGTGGAGGTGGGAGGATCTGCCAAGTTCCTATGTGACACCAAATCCTCCAACCAACAGTCCAGAGTGACAATGCATTACAGTGAAACCTCAAGATTCGAACAACTCACTATGACTCAGCTGGGACCAGATCACCCCCCTCAGGTGTTTGACCAGAAAACTGCAACTCATGTGGTCACGGCTGTGCTGTATGGAGCTCAAGCCTTCATGGTGTTTGATCGGTCGTTTGCAGAAGATGAAAACAAGCAGGAGATTGAGGGTGAACTGAATGTCATGATCAAGAAGATCCCTGGGTTTTCCATTGAGGGAAGAGctttaaaaatgacagatgagGATAATAAAAAGGCTGAGAATATCACCTGCACATTTCATGGTGACTTCCATCTTGAGCAGAATCCCACCACATACATGGAGGCCCTAGAGGTGTACAAGAACCTCCCCAAACAGCTGAAGGAAAATCCACAGAATGCAGTGCCAATAAAAGTCTGGCTCTATCCTCTAAGTTTACTGGATacaaaagcagctcagttggtgAGAGAAATCAGCACACGCTTGATTTCCAACACTGAAGATGTGATGGAGGAGCTGGTGGAGGTAGAGAGGACATGCAGTGACCTGTCCAGAAGAACAGAGGTAAATGTTTTCAGTGACATCAAAGAAAGGCTGCACTCATTTCAGGATTCATTTAGCATTTACAAGATGGTGCTCCAGAAAGCACTGGCCAGGGTCTTGCCTGCCATTCGAGGAGGAGGTATGGAGGAACAATCCCTGGAAGACATCATAATCATCCACTACAACTCCCGTGATTTGCTTAACCAATGGTTAGATGATGCAAAGTCTGAACTTTACTTATTGAATAATCACAGCAAGATGCTGAATGAGATCAACATTAAAGATTCAGACGGGCTCAACGCCATCCTTCTTAATCCTGATATTGATGTAGTACTGTGCTTGGCCTTCACATCTCTAAAATATGAAGACCCAAATCTTTCAACCCTGACAGAGTTTCTAAAATCTGCAGAGTTTAAAGAGcttgataaaaaagaaaaaccgcTTTCTGTGGCATCATATAGACAGTGGTTCAAAGATCCTGATGTCATTGCAAAGATGAGAGAGAACTTATCTCTCTTCAAGAGATTTTCAGAGGCCAATAAAGATGAGAAGAGTATCCGATTCATTATTTCTGCCATCTCCAATCCCTCCATTCCAGGCTCCTCCATCTATTTGTATGAAAATGGGAAACTGACAGACCCAAAGTTCCAGCTCGTGTCCAAGCCACCCCCACCAACAGTAAAGAATGTCTTGGAGCAAACTGTGACCCTGAAACTGCAGAAGTCCCCAACTGGAGAAACAGTGAAGTACAGAGTGGAGTACAAGCAGGTCAAAGCAGATTGTGGAGCTGAGGAACATTGGCTTGCTATAGACACAGCTGATGAAGAATTTAAGCTGACTGGATTGGTGGCTGGAAAGCAGTACCTGATCCGCTACAGGATAGTGGGTAAAGTGGGAGTGAGTGAAGCCAGTGAGACTGTCAGCCCTACAGTCTCTTCAATCATTGTTCCCAGGACCAGGAACGACTTCCAAGCATATTACCATCAACTCACTCTGGATCTGAACACAGTGAATAAAaacctctgtctgtctgaggagaacagagagaTTACTAAGACTGACAAAGAGCAGCCGTATCCTGATCATCCAGACAGATTTGACAAGCTTCCTCAGGTGTTGtgtagagagagtgtgtgtggacgctCTTACTGGGAGATCGAGTGGAGTGGAAATTATTCTGTGTCTATATCAGTGTCATATAAGAGCATCGGCAGGAAGGGACagggtgatgagtgtgtgattggataTAATGATCAGTCCTGGTGTTTGGACTGCACTCCATCCACATGCTCATTCTGGCACAGTAACTTACAGACTCATCTCCGTGTAAAGTCCATCAGCAGTAGAATTggagtgtatgtggatcacagtgcaggaactctgtccttctacagcgtCTCTGACACAATGAGCCTCATCCACACAGTCCAGACCACATTCACTCAGCCGCTCTATCCTGGGTTTTGGGTTAATAATGGATCAGTGAAACTGTGTCCGTTAATGAGAATAGACTGATGAGAGATTCTACCCCTAATGCTTTGAGGTgcatgataaatgataaatcagTAACAGTGAGATGTTATTGAGTCTCTTCatgacattaatattaacatgaatCAGAAATCCTCATCTAGACAGTAAgatcagtgtgtgagagatgatctgtgtgtctgtgcttttcTCAAACTCTATTTGTGCTGATTAACGTCAGTCTCACATCAATCATTTGTATTATTACTATCTAAATCAGTCATATATCTTATAATTCATGGGATTTTTCGCTGTTActtataataaaacaatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340466 lncRNA upstream 32285 25194 ~ 87891 (+) False G287513
XR_004580136.1 lncRNA downstream 19865 154129 ~ 154563 (+) True LOC117599770
XR_004580132.1 lncRNA downstream 20743 155007 ~ 155595 (+) True LOC117599768
XR_004580128.1 lncRNA downstream 254431 388695 ~ 391202 (+) True LOC117599767
XR_004580129.1 lncRNA downstream 254432 388696 ~ 391202 (+) False LOC117599767
XR_004580130.1 lncRNA downstream 254433 388697 ~ 391202 (+) False LOC117599767
XM_034313880.1 mRNA upstream 18197 85203 ~ 101979 (+) True LOC117599786
XM_034313883.1 mRNA downstream 68756 203020 ~ 210184 (+) True LOC117599788
XM_034313772.1 mRNA downstream 270888 405152 ~ 405946 (+) True LOC117599754
XM_034313888.1 mRNA downstream 376792 511056 ~ 517444 (+) True LOC117599791
XM_034313779.1 mRNA downstream 672057 806321 ~ 806730 (+) True LOC117599762
XM_034313775.1 mRNA downstream 672963 807227 ~ 807704 (+) False LOC117599757
TU340599 other downstream 672042 806306 ~ 897362 (+) False G287625
TU340601 other downstream 672042 806306 ~ 819547 (+) True G287625
TU340603 other downstream 672042 806306 ~ 831980 (+) False G287625
TU340640 other downstream 672929 807193 ~ 898410 (+) False LOC117599757
TU340641 other downstream 672929 807193 ~ 821061 (+) True LOC117599757

Expression Profile