RNA id: XM_034313691.1


Basic Information

Item Value
RNA id XM_034313691.1
length 3911
RNA type mRNA
GC content 0.43
exon number 8
gene id kcnk10a
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21219886 ~ 21247185 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGAAATGGGCAAAATACCGGATATGGGAGTGCTGGAGGACTCACTGTCCACTGTGGTCATGGCCAAATGGGATGCAGAGCACTGCAGCTGCTGGGAGGAACCTGAAGAGGAACCTGAAGAGGAACCTGAAGGATGTAGATGCTTTAAGATCAACAGGATCAGGTCCTGTGGATGCAGAAGGAGCGGAAATGTGAGTCGTGTTCGCGTCTGTATCGCAGCGCGGAGATGAAGCCTGGCTTCCACATCACGCcgaacaacaacagcaacaaaagacCATAGCGCGTTTCCACCAGAGTCATTCTTCagttctttatttcatttactaaTTCAGATGAAGTGAACTATTCGGcgaaaaaacatgaaatttccGGCAGAGAATCAGAGGAAACCGAGCAGTAGCTGGAGTCCTCCTCCAGTGGCAGTCCAGACCAACCTCGTTCCCCCGAAAAAAGTCCAGCCCGGGATGCTGCAGTCCAGTTTGGTCCAGGCCAGCGTGGCCACAATGCAGAACCCAATGGGATGTTCACTTCCTCGCCTCTCTGTTTCGCGGCCTGCTAGCATGGTAGCCAGCATGGAGGCGGGGGCAGACGGCTCGGCGCTTCTGTCCGTGATGAAGTGGAAGACAGTGCTGGCTGTGTTCGTGGTGGTGGTGATTTACTTAGTGGCCGGCGGCTTGGCGTTTCGAGCCCTCGAGCAGCCGTTTGAAAAAAACCAGAAGGACACAATTACAGCCGAGAAGGCAGCGTTCCTGCAAAAGCATCCCTGTGTCACACCAGATGAACTGGAGATTCTCATTAAGCACTCCATCGACGCGTTCAGCGCTGGAGTGAGTCCAATAGGTGACACAACGTATAACTTCAGCTACTGGGATCTCGGCAGTGCTTTCTTCTTCGCTGGTACTGTGATTACGACTATAGGATACGGGAACATCGCTCCGAGCACAGAGGGAGGGAAAACTTTCTGCATTCTGTACGCCATATTCGGCATCCCGCTCTTTGGCTTTCTGCTGGCTGGAGTCGGAGATCAGCTCGGCACCATCTTTGTAAAGACCATCGCCAAAGTGGAGAAGATGTTCaggAACAAGAATAATCAAATCAGCCAGATGAAAATCCGTGTGGCCTCAACGTTACTCTTCATCCTCGCCGGCTGCATCGTCTTCGTCACAATTCCTGCAGTTATTTTCAAAGAAATTGAAGAATGGACGGCGCTCGATGCgatttattttgttgttatcACACTAACGACTGTTGGCATTGGGGACTACGTCGCAGGAGGAAACAGGGAAAAAGAATATTATAACTGGTACAAGCCACTGGTTTGGTTCTGGATCCTGGTTGGTCTGGCGTACTTCGCTGCTGTACTGAGTATGATCGGAGACTGGCTAAGAGTCTTGTccaaaaagacaaaagaggAGGTTGGCGAGTTCAAAGCTCATGCTGCTGAGTGGAAAGCAAATGTTCGGGCCGAATTCAGAGAAACCAGGCGTCGCCTTAGTGTGGAGGTTCACGATAAACTGCAACGTGCCGCTACGATCCGCAACATGGAGCGTCGTCAGCTTGGCTTGGACCAGCGCGCTCAATCGCTCGATATCTTATCTCATCCAATTGAGCGACGAGTCGCAAATTTCAACATTCTGGATGCAGCAACTAACTTCAAGACTTCATCGCAGGAGAGCATCAATGCAAAGCTAAACGACAACATCTTTAACCGATTCGGCTCTGTCAGTAAACTGGCCAAACGGGCCAAGAACAAGGAGCTGAAGAAGAACATCCCAGGAGACGGACGGAAAACCGGCagtgaggagaagaaagagatggaggaggaagagtTGGAGAAGGAGGTCAACACCAGTTTGTCGGATCTACCATTGTTCGTCGAGAGCCCGAAATCACAGAACGGATTTGTGATGGTGCCAGCAAAgaccaaagaagaagaagaagaagaagaagaggaagaaaaagaagaaggaggaggaggaggaggaaaagaagaagaagaagtagaagaagaagaagaaaaagagaaggaaaaaaaacttgagGAGTTTCACATAGAAATGGACGCCTAGATGGAGAAATCATCTTTCTTGAAACATAAAAGTGCCTTATTTCTCATTGATGCTGATGGGAAAATTGTAACATCCCATTTTAATGTTGGTGAAACTTTTCACTGTGTCCTGATAACTTGATTAAAAAATTTCACCTGACAGACcattaaaagcaaaacagtttctgaaaaaggATCCTAGCAAAGTTTCAACAAGCGAACTGTAGCGAATTAAAGTGACATTTACTGGCCTGAAAGACTGAATGTTGATACTGAGCTCTTCCCTCAATGGACTTGaagatatgaaaataataaattcaaaatgcagacggagataaagaaagaaatctatTTAATTCATCAGAAAGAAAATCCATGATATACAtcaggcatgtgctgatataaaattttaaattatggtTTTATCATGGTTAAGGATGTTGTCAGGgtattaaatattagatatGTTCCGTTCTGGCAGCTTCTTTAGTAGTCACATTGGTTGAAGGTCTCAGTCTCTTTGGCAGCATTTTAACTGAAAAGCAGCCTTATCGTGGGTCACGTCGTCATGTCGTACATCACTTTCAGTATGCTGCTGGTCACTTGCTAGTTTACTGGATTATGTGAAGACAGATCTAGAACTAGCGGCACCTATTTTTCTGATGCTATACACAACCAGGCTACTCTTCACTCAATAACGTAGCTAGCTGGTTAGTGCACATCAAGTTATCTGCGAAGCAAGCTACACACTGTATAAATGGTGAGGTTATGTTACATTAAGTAATAATTCTGACCACAGAATGGCTTTTAGCAatgtacaaacacaaataaacccAACTTCACATACATTTGTAAATGACTGCTTGGTCCAACATGTTTGCTGAAACGTTTTTGTTGATGTTGTGCTATGAAAAGATTTATGGGATTGTCTACAGCAAGAAGGACATCTGAGATGTGGCACTAAAACTTGGCCATAACAAGTGGCTGCTTTCTGAAAGGAACAAACTTAATTTAAGAAACACTGTTGCCTATCTAGCATAGGGAACTAGCTTCTAACTGGAATACAATGTTAAACTTATCCCATATTTCTCAGACTTTTCAAAACAGAATTATTCACTACCTTCtgcttctaatttttttttactccagaATTAGTCATCCATATGAATCAGCCCatctttcaagcaggaaaatcaAATTAAGATGACAACACTGGCCAAAATATTACTAATGTGAAATAagggaaggggcggggcttccaggggatcagagagttcaaaataCTTACAcatctgtcaatcattccagattcataggATGGCTGGCTCATGTGctgcttttattgttttatttttaaataaatgttttgctgtatttttgagtgataaatTGTAGCAGTGTGTGCCAGCGTTAAAATCCGGAGCTTCGACACAAGATGTGTAAAAGTTGGAAGGTCTGAACTTTATATCTCACTAAAGGTGAATGGAGCGTAGAGAGAATATGCAggatatataactatatataacaTAACTGattatcggcacatgcctaATGTATATTCCTTAAAAACTTATATTGTCCAAAGGTAGCATTGAAAATTGGATGAAGTTCTGAAATTTTGAACCAAATGATATATGTGCATGATCTTGGATTTTTATTGTCgtctataaaaacacacatgctgttCATTTTCATAACCAATGAGATCTCAGGGCTTGTAGTCCATCCTACATCACGGTACATCCAGTCAGGAGCAAACgtctgagtgcaaaactgtttccttgtcttacaccacagtgctgttggattctggattgtgattggtcagaaggtgttgatgaatttctataacagcagcactga

Function

GO: NA

KEGG:

id description
K05389 KCNKF; potassium channel subfamily K, other eukaryote

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580112.1 lncRNA downstream 34254 21181940 ~ 21185632 (-) True LOC117599741
TU354247 lncRNA downstream 87884 21127407 ~ 21132002 (-) True G299032
TU354256 lncRNA downstream 102580 21115632 ~ 21117306 (-) False G299032
TU354239 lncRNA downstream 137060 21082521 ~ 21082826 (-) True G299026
TU354229 lncRNA downstream 148775 21070837 ~ 21071111 (-) True G299019
TU354295 lncRNA upstream 12271 21259456 ~ 21279791 (-) True G299070
XR_004580114.1 lncRNA upstream 253472 21500657 ~ 21501712 (-) True LOC117599743
TU354429 lncRNA upstream 253566 21500751 ~ 21501651 (-) False LOC117599743
TU354603 lncRNA upstream 325125 21572310 ~ 21592447 (-) True G299317
TU354615 lncRNA upstream 345303 21592488 ~ 21593249 (-) False LOC117599725
XM_034313693.1 mRNA downstream 22843 21189423 ~ 21197043 (-) True LOC113524822
XM_034313610.1 mRNA downstream 48169 21135577 ~ 21171717 (-) True LOC113524826
XM_034313609.1 mRNA downstream 93802 21119948 ~ 21126084 (-) True LOC117599722
XM_034313675.1 mRNA downstream 107457 21093477 ~ 21112429 (-) True LOC113524825
XM_034313850.1 mRNA downstream 220812 20995801 ~ 20999074 (-) True LOC113525589
XM_026911171.2 mRNA upstream 86080 21333265 ~ 21336939 (-) True LOC113524817
XM_026911172.2 mRNA upstream 95983 21343168 ~ 21352272 (-) True LOC113524818
XM_026911187.2 mRNA upstream 106444 21353629 ~ 21367545 (-) True LOC113524833
XM_034313692.1 mRNA upstream 325140 21572325 ~ 21574552 (-) True LOC117599736
XM_034313612.1 mRNA upstream 327398 21574583 ~ 21578269 (-) True LOC117599724
trnae-uuc_18 other downstream 9633 21210182 ~ 21210253 (-) True trnae-uuc_18
TU354232 other downstream 146210 21072926 ~ 21073676 (-) True G299022
trnar-ucu_11 other downstream 260298 20959496 ~ 20959588 (-) True trnar-ucu_11
trnai-uau_9 other downstream 262163 20957631 ~ 20957723 (-) True trnai-uau_9
trnae-uuc_17 other downstream 469315 20750500 ~ 20750571 (-) True trnae-uuc_17
trnav-uac_10 other upstream 485004 21732189 ~ 21732261 (-) True trnav-uac_10
TU354804 other upstream 724896 21972081 ~ 22067550 (-) False srsf5a
TU354827 other upstream 748929 21996114 ~ 22000833 (-) True G299449
TU354824 other upstream 785302 22032487 ~ 22067550 (-) True srsf5a
TU354807 other upstream 789411 22036596 ~ 22067550 (-) False srsf5a

Expression Profile