RNA id: XM_026911187.2


Basic Information

Item Value
RNA id XM_026911187.2
length 4944
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC113524833
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21353629 ~ 21367545 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cattaaaatacattcatttcTGTTAACACAAACATATTCACTTCAGGATAAATAGCcagtaatgttttctttaaatgggACGTTTCACATCGAGTGTCGCTGCAGTTCCACCAGTCACCAGCAGGTGGCTTCAGTCCCACATGAGAAACCCTACACCCTGCTCTTACTACCGGGGAGTGTGGAATAGACGcgcatgaaaacacacacacacacacacacacacacacacacgctgtgtaTGCGGATGCGGATGTGTGCAgtcagtgtgttggtgttaGAGCCGCAGGATGAAACACATGCCGAGTTACAGGCGCGTGCAGGTGAACAGGTAGAGTAAAGACAGCTGAAGGGTTTCATTTAAGCGCAGTGAGATGCGGCGGTGATTATTAAGTCGGTGCATggctgcggtgtgtgtgtgtgtgtgtaggtgtgtgtgaatcCAGTCGGTAAAACTGCACACATGAGCGATTTTACAGGCGCACCGGGGAGTCGTTTCTGCGCCTCGGACTGGGCGGTGAGTGATGCGCGCGCGGACGTGATGGACACACACAGGGACGTGAtggacacacacagggacatgctgttaggCCTCGCTGAGGATGCTGCCTACTCGGACCCGGACTATCTGGACCCGAACTACACGGGAGACGGAGACGAACCGACGGCGAGGACGCGCCCGCGCCAGCGCCCGAGCACGCGCAGCCGGTCCGGAGAGGTGACGGAGCTCGAGGCGCAGGAAGTGCGCTGGTTCTACAGAGAGGACAAGAGGAACTGGAAGCCCTTTGTGGGACACGACTCTCTGAAGATCGAGCTGGCTTACCGGACACTGTGCGCGCTCAGGGATGCGCGTGAGGGCGTGTTTGAGCCggaggacagtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgagtgtgtgtgtaaggacgCGGGTGTGGACGCGGTGTGTGTGCGCGGAGGACTGTACGAGGTGGATGTGAAGGAGAAGGAGTGTTATCCGGTCTACTGGAACCagcagGAGCGTATCCCGGTGATGAGAGCTCAGTGGTTTACAGACGGGACGTGGCTGCCGCTGGACGAGGAGGACGGAGACCTGATCGAACTGGAGCATTTAGCAAAATTTAGGGGACATCGACTAGAAGATTCCCTCGAAACAGAGGGAGTGAGCACAGCGCCGGAGAGCAAGGAGGtggtgCACAGTGTGAAGTTGAGTCGCAGCCATGTAGATTGGCACAGTGTGGATGAAGTTTATCTGTACAGCGACGCCACAACGTCCAAAATCGCTCGCACCGTCACACAGAAACTCGGCTTCTCCAAGGcctcCAGCAGCGGGACGCGTCTCCATCGTGGTTATGTGGAGGAGGCGGCTCTGGAAGACACGCCCCCTGCCGCCACCCACATTGTGTTTGTGGTGCatgggattggtcagaaaatGGACCAGGGGCGGATCATCAGGAACACCAGCATGATGCGTGATGCTGCGAGGAAAATGGCGGAGAAACATTTTTCAGACAGAACGACGGAGCACGTGGAGTTCCTGCCTGTGGAGTGGAGATCGAAACTCTCTCTGGATGGAGacACAGTGGACACGATCACGCCGGATAAAGTGCGAGGACTGAGAGACATGTTGAACAGCAGCGCTATGGACATCATGTACTACACCAGTCCACTGTACAGGGACGAGatAACGCGAGGtctgacctcagagctgaatcGTCTCTACACGCTGTTCTGTTCCCGTAACCCCGAGTTCGAGGAGAAGGGCCGAGTGTCTATCGTCTCACACTCGCTCGGCTGCGTCATCACCTACGACATCATCACTGGCTGGGACCCCGTCCGCTTACATCATCAGGAAGCGCCGGTCGCCGTGGAGACGGACCCTCTGTGGCGCAGCAGCCATGAACAGAGACTGTTGGAGGAGCTTCAGCTCACACGCATGAGGTTAAGGGATTTGGAGGATCAGTTTCAGAGCCTGAAGTCCTCGAGGAATTCTCCAGCATTAAAATtcaaggtggagaACTTTTTCTGCATGGGTTCTCCGCTGGCCGTGTTCTTGGCTCTGCGTGGGGTTCGTCCCAGTTCCTGCAGGACTCAGAACCACATCCTGCCACGCTCCATCTGTTCCAGACTCTTCAACATCTTCCACCCCACAGACCCGGTGGCGTACAGACTGGAGCCTCTGATCCTGAAACACTACAGTAACGTCGCTCCTGTGCAGATTCACTGgtaCAACACCAGCAGCCCCACCCCATATGATGACATGCGGCCGGTGTTTCTGACCCCTctgaaggagtgtgtgtctcaATCAGAGGGCGAAAACACACCGAGTCCCTGTACATCCCCCCCGCAGCAGCGCAGAATGGGAGAATCCATCACCAACCTGGGGAGGGCTAGCATCATGGgagcgGCGAGCATCGGTAAAGGTATTGGTGGAATCCTGTTTTCCCGTTTCTCCCGATCGAGTGGACAAGTGGGCGGAGCCGAAGAGGAGCCAATCAACTCGGAGGTGGGGCCATATGAGACAGAGGGTGGGGCTATCGGGGAGGAGGGTGGAGTCACGGAAACAGAGGACAAGATGGAGGAgaagacggagagagagaatggcATGTCCCAGTCCACGTCCACCGTCATGGACAACTCTACACTCTtggagcTGGATCGGCGTATTGACTTTGAGCTGAGGGAGGGGCTGGTGGAGAGCCGCTATTGGTCAGCGGTGACATCACACACAGGCTATTGGTGCTCGTACGACGTGGCTCTGTTTCTGCTGACGTTCATGTACGGAGAGGAAACGACGCATGGAGAAGGGGAAGACACTGCTGagtcataacacacacacacacacacacacacacacacacacacacacacacacacaaggcatgTGTCGATGTTACATTCCCCTTCTTACGTTCAGCTACAGTTTGCTAAACTCACCAGCTAGGATAAGTCATCCTTTTAGCTAGTGCACAAGCTGCTACAACACTGTTTACAATCGGAGCTGTGTTGTAGCTAAGCTAACAATCTAGCGAGTGATGATGAGTAAACAAATCTGCACGTCGGTTTAACATTTTATCCCAGTCTACAATATTATCGCGGTCTTGTAGTTAAGATGAATAGCTGCTCCCACTGGCCGTGTTTCAACCATAAACAAACGTCAGCTGTGTTTCATATAGAATTCAGCTTTAAAcctacactctcatacacacacacacacacacacacattaacatgtgGCTAATGTTTTATCACAGTGTGAATTAAAGCTAGAAAACGTACATTATTGATCAGTCTttcagtaaagttgtgtgtaaaagttttCATGTCCAAACGGAACTAAACATTCCACCAGATTTATAAAAGTTTATGAATTTCTTCGTACTTGTGTGAATGTGCTGATGAAAAACACCAATCAGCTGTTTTTTCCAAACATGTTCATGATGAGGCTGATTtccatttagccacgcccacaaaacaccataaaaggcaaagagagctcaaaaaaggcaaaatggtgactaaacagtgaaagagagcCTCCTGAGCGTGACGTGTATTAAATCTTCcactaatgcagctcagccactgcagcgcatcCGCTACCCGAGACACACACGAACCCTTTCAGCTTTTATAgagtgccattacttttgtcctcaTTGAAGCGCTAGTCGAATTTGAAGATGATGAATTGAGGCTCACATTAGTGAATCTACTTGTACAGAAACTTAAGCTAATTTGTAAGACACCATTTTACAAAAGATTTGCGTAAATGCTCCTGGGAACGAGTTACGAATAAATGAACTCATATACAGAGCGAGACGATGAAGCCCAGTGTTCCACACAACACGCTCACACGAACACCTTCTGTCGAACATCAGCGATCAGGACACGCCCCCTGGCACCAGATAGCTGATGGTTTAACGTAGGTGGTGCATGTAAAGGCACAATATCATTGGCTAAGGCTAACTGCAGTGctgcgctgtgattggtcagtgtgtaTTAATGGGAATATTAAAGcatgtttatgtgtattttcACCCTCgtgtttatttcatattcacCTTCAGAGAAACTTCACATTCAATTCACTCTTACATGAATGTTACTTATTTGtgatttatgtaaataaatataaatttacgTAAAATAATTAGAGCTTTATATCTGAGTTGTTGAGCTGTAACTTGTTTCTGTATCAGAGCTGATCTTTTAATGTTTACATTCAACTCTGCTGGGAAGAAAACTGGAACCGTAGTGAATGTTAACtgttcaaaatgtaaaaaattgccaaatatatacgtatatacaTGTTCTGTACCTGGTTTCAAGAGTGTTGTTGTTTGTCCTGATGTCATAGACACTGTTCATTGGCTGAAATCACTCACATGACCACCTACACTAAAGATGACATCACTGGGGTGACCACACCCCCAAAAacctgaaataaacacacacacacacacattaaaaagacTTGACACTGATTTCAGCTAATGACGTGTTTCAATAATTATTTgttagtatgtttttttttcctgcacacAGAAAGCCTTATCAGATTTCTACGTTTAATTAGAATTTCTGTAAGTAAACAGATTGATGCTGAAGTTTGTTGAAGGAAGTCACTGATATGTTCAGCACTCAGTACAtcactactgaaaaaaaaacgttcagtttgttgtattttgtttgtggtgcagtgtttttttttaaacagttaataatctGTACAtctttatacacattatactctgtgtgtgtgtgtgtgtgtgtgtgttctcacacactcatttctccTCTGCTTGCTATCACATTAACTCATCTCAgtgttattttacacttttgtgTTTCATATACTTTAAATGTTCTGTATGTTTTGTGCATCTAAAAACGTGCTCATGATTAAATTTGTAgcaaaaatgcaataaaacaagCGAAAATGTG

Function

GO: NA

KEGG:

id description
K13619 DDHD1; phospholipase DDHD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354295 lncRNA downstream 73838 21259456 ~ 21279791 (-) True G299070
XR_004580112.1 lncRNA downstream 167997 21181940 ~ 21185632 (-) True LOC117599741
TU354247 lncRNA downstream 221627 21127407 ~ 21132002 (-) True G299032
TU354256 lncRNA downstream 236323 21115632 ~ 21117306 (-) False G299032
TU354239 lncRNA downstream 270803 21082521 ~ 21082826 (-) True G299026
XR_004580114.1 lncRNA upstream 133112 21500657 ~ 21501712 (-) True LOC117599743
TU354429 lncRNA upstream 133206 21500751 ~ 21501651 (-) False LOC117599743
TU354603 lncRNA upstream 204765 21572310 ~ 21592447 (-) True G299317
TU354615 lncRNA upstream 224943 21592488 ~ 21593249 (-) False LOC117599725
XR_004580115.1 lncRNA upstream 229437 21596982 ~ 21598054 (-) True LOC117599744
XM_026911172.2 mRNA downstream 1357 21343168 ~ 21352272 (-) True LOC113524818
XM_026911171.2 mRNA downstream 16690 21333265 ~ 21336939 (-) True LOC113524817
XM_034313691.1 mRNA downstream 106444 21219886 ~ 21247185 (-) True kcnk10a
XM_026911168.2 mRNA downstream 107713 21219886 ~ 21245916 (-) False kcnk10a
XM_034313693.1 mRNA downstream 156586 21189423 ~ 21197043 (-) True LOC113524822
XM_034313692.1 mRNA upstream 204780 21572325 ~ 21574552 (-) True LOC117599736
XM_034313612.1 mRNA upstream 207038 21574583 ~ 21578269 (-) True LOC117599724
XM_034313613.1 mRNA upstream 224729 21592274 ~ 21596968 (-) True LOC117599725
XM_034313703.1 mRNA upstream 258315 21625860 ~ 21640993 (-) False crip2l
XM_034313702.1 mRNA upstream 267215 21634760 ~ 21640993 (-) True crip2l
trnae-uuc_18 other downstream 143376 21210182 ~ 21210253 (-) True trnae-uuc_18
TU354232 other downstream 279953 21072926 ~ 21073676 (-) True G299022
trnar-ucu_11 other downstream 394041 20959496 ~ 20959588 (-) True trnar-ucu_11
trnai-uau_9 other downstream 395906 20957631 ~ 20957723 (-) True trnai-uau_9
trnae-uuc_17 other downstream 603058 20750500 ~ 20750571 (-) True trnae-uuc_17
trnav-uac_10 other upstream 364644 21732189 ~ 21732261 (-) True trnav-uac_10
TU354804 other upstream 604536 21972081 ~ 22067550 (-) False srsf5a
TU354827 other upstream 628569 21996114 ~ 22000833 (-) True G299449
TU354824 other upstream 664942 22032487 ~ 22067550 (-) True srsf5a
TU354807 other upstream 669051 22036596 ~ 22067550 (-) False srsf5a

Expression Profile