RNA id: XM_026911740.2


Basic Information

Item Value
RNA id XM_026911740.2
length 1347
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC113525267
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 859667 ~ 861490 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagcCTTGTGTCTCCTCCTGCTTCTGTGCTGATGGGTATTTAATGCCTCACTCTGAGGTCCTTCACTCATTATTTACCTCATCACACTCTTCCTCACCTTCACGATGAAGCTGATCATCCTAGGGTTCGTGCTGCAGGCATTTGGGTACCTGGCTAATGGAAGGGTGGTAGAGTCTTTTAAGGATTCATGTCCTGATTTCTTCATTGAAGATCCATCAGACCAAAATGTCCACTACCCTCCCACTGTTCTTCATGATAGCCAAAATCCAAAGAGATACCAGCAGATTTGTCAGCAATGGAGCAATTCATACAGATACGCCACTCTGTATGACACAAAGTGCAGGATCCCAGTGTACTCTGCTTATTACTATGTAGGATATCACAAGGTAGACAAAGCTGAGTGGAAGATTGAGCCACAGCTTGATGACCCCAATCTAGGGCCTGAGATGGCACGAGAAAACACCGTAGAGACAAAAGACAAAGGCAAAAACCAGGCACTGTATGATGACTATGCATCTCATGCAAAAGATTACACCAGGGGCCACCTTTACCCACGCTGCCACAATAATGATCAGGACTGTGCCATtgccacctacacacacaccaatgccGTACCACAATCTCAAGAAGACAACAATGTGTGGGCTCACAAGGTGGAGCAGAAGATGGAGAAGCTCATACAGGACAACTGTGACAAGGGCTTTGCACATGTTGTGACTGGAGCGGTGCCTGGCCAGTCCTGGCTGCAGATCAAGAGAGATAACATCCCTGTCGAAGAAGGAGTCAACATCCCTGAACATTTCTGGACTGCCTACTGCTGccatgacaaaaaaacaaatgctcTCCTGTCAGATGCCTGGCTGGCCCGCAGAAACCCTAAAGGACTGGTGGTGCGGAAGAGGACGGTGAAGCAGCTGGAGGAGGAGCTCACCCCTCTCTATGGAAACCCAGAAGGAGGATTCAGCATGTTTGGAGGGTTGTGCCAAGGGAGTATCATAAGCAGATTTTATTATGCTCTGGTTGACCTTTGTTTTGACTTTTCTAGTAACTAAACATGAACCCTCTACTCTTGTCCAAGTGTTATACTTAGCAAATCACAGTTGTCTCTGACTGAGGTTTTGTTCCTGCACCTCTTATAGCAACCTCAATCTCAGGGGTCATCCCTTGTTGATTACTGTCCTGACTGATTTATGTGCTATTTGATTTgatgataataattataataataatgtattgttTATAAGTGCACTATCCTgggtcacccagatgaggatgacttcccttttgagtctggttcctctcaaggtttcttcctcatatcatatcatatctcagggagtttttcct

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340609 lncRNA upstream 57143 762431 ~ 802524 (+) True G287627
XR_004580133.1 lncRNA upstream 391263 454598 ~ 468404 (+) True LOC113525268
XR_004580129.1 lncRNA upstream 468465 388696 ~ 391202 (+) False LOC117599767
XR_004580134.1 lncRNA downstream 64743 926233 ~ 926639 (+) True LOC117599769
TU340884 lncRNA downstream 128720 990210 ~ 990435 (+) True G287814
TU340887 lncRNA downstream 144177 1005667 ~ 1007006 (+) True G287817
TU340963 lncRNA downstream 322593 1184083 ~ 1184363 (+) True G287872
TU340985 lncRNA downstream 380371 1241861 ~ 1242067 (+) True G287891
XM_034313776.1 mRNA upstream 26842 832360 ~ 832825 (+) True LOC117599758
XM_034313778.1 mRNA upstream 27821 831420 ~ 831846 (+) True LOC117599761
XM_034313773.1 mRNA upstream 33504 824677 ~ 826163 (+) True LOC117599755
XM_034313777.1 mRNA upstream 40244 818996 ~ 819423 (+) True LOC117599760
XM_034313774.1 mRNA upstream 46865 812260 ~ 812802 (+) True LOC117599756
XM_034313780.1 mRNA downstream 35510 897000 ~ 897286 (+) True LOC117599763
XM_034313794.1 mRNA downstream 153394 1014884 ~ 1036096 (+) True slc5a6a
XM_026947247.2 mRNA downstream 153394 1014884 ~ 1036096 (+) False slc5a6a
XM_034313889.1 mRNA downstream 342023 1203513 ~ 1208039 (+) True LOC117599792
XM_034313502.1 mRNA downstream 397686 1259176 ~ 1264632 (+) True LOC117599677
TU340603 other upstream 27687 806306 ~ 831980 (+) False G287625
TU340641 other upstream 38606 807193 ~ 821061 (+) True LOC117599757
TU340601 other upstream 40120 806306 ~ 819547 (+) True G287625
TU340986 other downstream 381567 1243057 ~ 1243672 (+) True G287892
XR_004580082.1 other downstream 397686 1259176 ~ 1264632 (+) False LOC117599677
TU341023 other downstream 496696 1358186 ~ 1359362 (+) False srp9
TU341376 other downstream 1135307 1996797 ~ 2008806 (+) False ptchd4
XR_004580079.1 other downstream 1271668 2133158 ~ 2141637 (+) False LOC113546780

Expression Profile