RNA id: XM_026922707.2


Basic Information

Item Value
RNA id XM_026922707.2
length 3553
RNA type mRNA
GC content 0.48
exon number 19
gene id adam17b
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10619216 ~ 10636229 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTTTGGGACTTTTCGCAGTTTCTTTTTCGGCGTGATCGTGattacgttaaaaaaaaaaagtaatatctAACAAATGACTCGgatttgtttaatataaaaatgaacttCTTTTGTACTTTGGTGTGTACATGAAGGTCCACACTGAGAGCCGAGACACTCTGTGCCATGTCCAGATGTTAATCCACATCAGTAATCCGGCGGATAAATGATGTTGCTTGTTGCTTACAGGAGGTCTGTTTGCTCTCAGTGCGCCATGAAACACGTCGTTTTTCTTCTCACAGCTTTCCTTTTGGCAGAGTGCTCTAAAAGACCTGGCACAGATGGCGAATATGATCACTTGAGGTCCTTGCTGTCTGACTTTGATGTTCTGAAGCTGTCCAGTCTGCAGCAGCACTCTGTGCGTAAGCGAGATGTGCAGAgccacacacatgcagagagacTGCTCACTTTCACAGCCTTACACAGGCATTTCAGGCTCTACCTGACCTCCAACACTGAACTGTTCACTGAAGACTTCAGCGCTGTGGTGGTGGAGAAAGACGGCACACACCAGAACTTTGAGGTCCACAGACAGAACTTCTTCACGGGCCATGTCATCGGGGAGGAGAACTCACGCGTACAGGCACATGTTGATGACAACGACTTCACTGCTCACATTCTGACCGATGAGGCTGAGTACAACATAGAGCCTCTGTGGAGGCTCACTCAAAGCCCCCCGGATGGCCGCTTACTGGTGTATCGCTCGGAGGACATCCGGAACGTGAGCCGTCTCGCCGCTCCTAAAGTGTGTGGCTACATCACAGCAGAGGCCAGTCAGCTCCTGCCTGAGCATGTGCGCACAGCCACGGCAGCAGAGGAAAAACAAGAAGAGGAAGATCACCTGAGAGTGCGGAGGCAGGCAGTTGATCACAGGAAGAACACATGCCCTCTGTTGCTGGTGGCAGATTATCGCTTCTTCAGACACATGGGCCGCAAGGAGGAGAGTACCACCATCAACTACCTGATTGAGCTGATTGACCGGGTGGACGACATCTACAGAAACACATCTTGGGATGAGGAGTTTAAGGGCTATGGTGTTCAGATCCAGCAgATTATGATCAACAAATCCCCCACTAAAGTGGAACCAGGACAAACCCACTACAACATGAAGGGGAGTCCAGTGAAGAACAAAGATGTGTGGGATGTGAAAAGACTTctggagCAATTCAGCATTGACATCGCAGAGAATGCCTCCAAAGTGTGTTTGGCTCACTTGTTCACCTATCAGGACTTTGATGAGGGCACGCTAGGCCTTGCCTATGTCGCCCCTGCCAAAGAAGAGGCTCCTGGAGGAGTGTGTTCCAAAGagtcCCCTCAGTCAGGAAATGACCACCGCACCATATACCTGAACACAGGCTTAACCAGCACTAAGAACTATGGGAAGACTATTCTGACTAAGGAGGCTGATTTGGTGACGACCCATGAGCTCGGGCACAACTTCGGGGCTGTTCATGACAGAGATGACGTGCCATCCTGCGCCCCCAGCGAGGACCATGGGGGAAAATACGTCATGTACCCCATTGCTGTGAGCGGAGACCATTCCAATAACAGGCTGTTTTCCAACTGCAGTAAGATGTCCATCGTGAAAAGCCTGAGACACAAGGGCCCGTCATGTTTTAAGGAGAGAAACAGTAAGGTGTGTGGGAACTCGCGAgtggaggagggagaggagtgTGACCCCGGTCTGGTCCACCTCCAAACTGACCTCTGCTGTACCTCCGACTGCAAGCTACGCCCTACAAAGCAGTGCAGTGATAGAAACAGTGCCTGCTGCAAGAACTGTATGTATGAGAAGGTCGGGAAGCCGTGCCAGGAGCCCATCAATGCCACCTGTAAGGGGATGTCCTACTGCACAGGTAACAGCAGTGAATGTCCTCCTCCAGAGAACCTGCCTGATAACACCACTTGTGTGGACAACGGACAGTGTCTGAATGGAGAGTGTATACCATTCTGTGAGGCTGGGCTCAACCTGCTTTCATGCGCCTGCAATGAGACGGATCAATCGTGTATGGTTTGTTGCCGCAGTAAGAGTGGTGCATGCTCTCCATATCAGGATGAGAGAGGAAACTTCCTGTACCTGAGAAAGGGCAAACCCTGCACTGTGGGCTTCTGTGATGGAAAGGGTAAATGCATGAAGCAGGTGCAGGATGTCATTGAGAGGTTGTGGGATTTCATTGAAAAGCTGAACATCAACACATTTGgGAAATTCTTGGCTGATAACATTGTGGGCTCTGTAGTGGTCTTTTCCCTGCTCTTCTGGATCCCGCTCAGTATTCTTGTCCACTGTGTGGACAAGAAGCTCGACCAGCAGTATGAACTGAACACAAGATCACTCTTTTACCCCAGCAATGCAGAGTTGCTGAGCAGTCTCGATTCAGCCTCAGTGCGCATCTTCAAGCCTCACTCTTCCTCAGCTCACTCTGCCGTCCCACGCTTCCAGAGCAGCACCCCTCCCGCCCCTCTGACTGCAGGCAGCTTAACGACTCCAGCCTCAGGCATGTTGGCTAGCACGGAGCCTCCACGCATGGACACCATCCAGGAAGACCCAAGTAACGACTCGCGCCTAGACGAGCAAGTCCTGGGGGAAGACTTCACCACTCACACCAATGCAGCTCGCTCCTTTGCGGACCTGACTGATGCTGTAGAGAATGATCTGGAGAGATCATTCAAGATGAAGACACACGGGCACAGCATCAGGAAGGAGACAGagtgctgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaactgacCTTTATaacagaaagtgtgtgaaaaGGAGTGAGAGTGACTGCATGAACTCCAGAGGAGAAGCAGAATAAGCAAAGCTTGCATAAGTAAAGTGTGGGCTGGAGCTTATGTAACTCCGTattcagaaatacagaaaggCTGTATGGTTTAGGAGCACTTCAATTCCCTGTAGGGTGAACAAAGTGTGTTGCTTATGTTTACGTAATGCTCAATTTAGCACTGAAGCTGCAGTGACTACAGGGGGCACATTTAGCTAAAGACGAATGTAGTGACTTTGCTTTATGAATTTCAGAGGTACACTTCAAGTCacttacattttgtttttcaacagtctatagtaacaaaaacagttttaaaggaaaatgaaagTTATTGGATACGTTTGACTTTATTACTACAgaattaaatattatgtaaagaGAATTCAAAAAATGGCTTTCAAGTACACACTCATCGGCCACTTTATTAGtgaaaacctgtacacctgctcatttatgcagttatccaatcagccaaacatGTGGCAGGAGCACGATGCATAAAaccaaatacaggtcaagagcttcaattaaagttgaaacacatgaaacatcaaatggggaaaaaatgtgatcttgacTATGTTGTGGTTATACCAGACAGgttgctttgagtatttcagaaactgctgatctcctggggttTTCACGCACAGTCTctcgagtttacacagaatggtgcgaaaatcaaaaacatccagtgagaggtggttct

Function

GO: NA

KEGG:

id description
K06059 ADAM17, TACE, CD156b; disintegrin and metalloproteinase domain-containing protein 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347623 lncRNA upstream 9370 10609626 ~ 10609846 (+) True G293411
TU347592 lncRNA upstream 58200 10560797 ~ 10561016 (+) True G293380
TU347551 lncRNA upstream 66209 10552241 ~ 10553007 (+) True G293345
TU347561 lncRNA upstream 81576 10536964 ~ 10537640 (+) True G293350
XR_004580103.1 lncRNA upstream 408218 10198849 ~ 10210998 (+) True LOC117599717
TU347646 lncRNA downstream 7271 10643500 ~ 10644152 (+) True G293427
TU347670 lncRNA downstream 39451 10675680 ~ 10677135 (+) True G293445
TU347680 lncRNA downstream 45081 10681310 ~ 10681571 (+) False LOC117599733
TU347766 lncRNA downstream 382177 11018406 ~ 11021310 (+) False G293528
TU347769 lncRNA downstream 382177 11018406 ~ 11024973 (+) True G293528
XM_026923072.2 mRNA upstream 954 10610127 ~ 10618262 (+) True ywhaqa
XM_026923730.2 mRNA upstream 91776 10503334 ~ 10527440 (+) True fmn1
XM_026923731.2 mRNA upstream 92951 10503334 ~ 10526265 (+) False fmn1
XM_026923090.2 mRNA upstream 207068 10383664 ~ 10412148 (+) True aven
XM_026922696.2 mRNA upstream 240992 10374563 ~ 10378224 (+) True emc7
XM_026922934.2 mRNA downstream 12896 10649125 ~ 10671634 (+) True asap2b
XM_034313662.1 mRNA downstream 45096 10681325 ~ 10682664 (+) True LOC117599733
XM_026923786.2 mRNA downstream 46803 10683032 ~ 10718524 (+) True mboat2b
XM_026922795.2 mRNA downstream 86165 10722394 ~ 10742331 (+) True kidins220b
XM_026922798.2 mRNA downstream 86165 10722394 ~ 10742331 (+) False kidins220b
TU347333 other upstream 457465 10158955 ~ 10161751 (+) False LOC117599798
TU347160 other upstream 668485 9903750 ~ 9950731 (+) True G293016
XR_004580138.1 other upstream 1458315 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 1622220 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 1727476 8891668 ~ 8891740 (+) True trnak-uuu_18
TU347771 other downstream 382687 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 507658 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 508710 11144939 ~ 11145012 (+) True trnai-aau_2
trnai-aau_3 other downstream 509762 11145991 ~ 11146064 (+) True trnai-aau_3
trnai-aau_4 other downstream 510805 11147034 ~ 11147107 (+) True trnai-aau_4

Expression Profile