RNA id: XM_034313636.1


Basic Information

Item Value
RNA id XM_034313636.1
length 6016
RNA type mRNA
GC content 0.50
exon number 28
gene id kidins220b
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10722394 ~ 10742331 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGACACCACTACATCTATAAAGATGACCACTATAGCCATCCAGAACCTCTTCAGCTATGTGGAGGAGGAGAATCTGGCTGCCCTTAAGGCCCACCTGGATAAGTTCAAAGAGGTGGACGGTCGCAGTGACAATGGGCAGACTCCTCTAATGCTGGCTGCAGAGCAGGGCAGTTTGGAGATTGTCCAAGAGCTCATCAGAAGAGGTGCCAATGTCAACCTGGATGATGTGGACTGCTGGTCTGCCTTGATCTCCGCAGCCAAAGAGGGGCATGTGGAGGTGGTGAAAGAGCTTCTGGATAACAGCGCTTATATTGAGCACAGAGACATGGGAGGCTGGACTGCTCTTATGTGGGCTGCATATAAAGGTCGTGTGGAGGTTGCAAAGGTTCTCCTGGAGAATGGGGCCAATCCCAACACCACAGGACAGCAGTACAGCGTATATCCCATTATCTGGGCTGCCGGCAGAGGCCATGCTGAAATCGTCAAACTCTTGTTAAAGCAAGGAGCGAAAGTCAACTGTTCTGACAAGTATGGCACCACTCCATTGATCTGGGCTGCCAGGAAGGGCCACTATGACTGTGTGATGCACCTGCTAGAGAACGGTGCTGATGTTGACCAGGAGGGGGCAAATTCGATGACGGCTCTGATAGTGGCTGTGAAAGGCGGCTACACTGAGGTTGTGAAGGAGCTGTTGAAGAGGAACCCCAATGTGAACATGACCGATAAAGATGGCAACACAGCTCTGATGATCGCAGCCAAGGAGGGCTACACTGAGATTGTGCAGGATCTGCTGGACGCAGGGACCTACGTCAACATCCCTGACAGGAGTGGTGACACAGTGCTGATTGGAGCTGTTAGGGGTGGCCATGTAGAAATTGTAAGAGCCCTGTTGCATAAGTATGCTGACATCGACATCAGAGGACAGGACAATAAAACAGCTTTGTACTGGGCTGTGGAGAAGGGAAATGCCACCATGGTCAGAGACATCCTGCAGTGTAACCCTGACACAGAGACCACTACCAAGGATTCTGAGACTCCCTTGATCAAAGCTACCAAGATGAGAAACATTGAAATTGTGGAGCTACTCCTGGATAAAGGGGCAAAAGTGTCTGCTGTGGATAAGAAAGGGGACACGCCTCTTCACATTGCCATCCGTGGGAGGAGCCGCAGGCTGGCTGAGCTACTCCTGCGCAACCCTAAAGATGGACGCCTGCTCTACAAGCCCAATAAGGCAGGAGAGACACCATACAATATCGACTGCAGCCACCAGAAAAGCATTCTTACTCAAATCTTTGGAGCCCGACACCTGTCCCCCACTGAGACAGATGGTGACATGCTGGGCTATGACCTGTACAGCAGTGCTCTGGCTGACATCCTGAGTGAGCCCACCATGCAGCCCCCTATCTGTGTAGGCCTGTATGCTCAGTGGGGCAGCGGCAAGTCCTTCCTGCTCAAGAAGCTAGAGGatGAGATGAAGACGTTTGCAGGGCAGCAGATTGAGCCGCTGTTCCAGTTCTCTTGGCTAGTGGTGTTCCTGTCACTCTTGCTGTGTGGCTCTGTGGCTCTACTCCTTGGGTTCACTGTAGACCCCAACCTGGCCATTGCTGTCTCCCTCAGCCTGCTGGCTCTACTCTACTTGTTCtttgtGGTTGTGTACTTTGGGAGTAGGCGTGAGGGTGAAAGTTGGAACTGGGCTTGGGTTCTCAGCACGCGGCTCGCTCGCCACATTGGCTACTTGGAGCTACTGCTCAAACTCATGTTTGTTAACCCGCCAGAGCTGCCTGAGCAGACCACACGGGCACTGCCTGTCAGGTTCCTGTTTACAGATTATAACAGGCTGTCCAGTGTTGGTGGAGAGACCTCCATGGCAGAAATGATCGCCACTCTCTCTGATGCCTGTGAGAGAGAGTTTGGTTTCATGGCCTCCAGACTCTTCCGCGTCTTTAAGACGGAGGACACTCAAGGcaaaaagaaatggaagaagACATGCTGCATCCCATCCTTTGTGATCTTCCTTTTCATCCTGGGTTGTTTGATCACGGGCATGGCCTTGCTGGCCGTCTTCAAGGTAGACAGCCGGAACCAGACCGTGAATGCGGTGCTGGTTGCCATGGCGAGCGTGGTGGGCCTGGCTCTTCTGCTGAACTGCAGGACGTGGTGGCAGGTGACTGATTCAGTACTGAACTCACAGAGGAAGAGGCTGCACAGTGCTGCTAACAAGATGCAAAAACTTAAGAGTGAAGGTTTCATGAAGGTGTTAAAAAGTGAGGTGGAACTCATGGCTAAAATGGCAAAGACTATTGACAGCTTCACCCAGAATCAAACACGTCTAGTTGTCATTATCGATGGTCTGGATTCCTGTGAGCAAGATAAAGTCTTGCAAATGTTGGATACGGTGAGGGTGCTTTTCTCCAAAGGCCCATTCATCTCTATCTTTGCCAGTGACCCTCACATCATCATTAAAGCCATCAACCAGAACCTGAACAGTGTATTGCGTGACTCCAACATCAACGGCCATGATTACATGCGCAACATTGTACACCTGCCCGTCTTTCTCAACAGCCGAGGCCTTAGCAGTGCTAAGAAGATGTGTGCACCGGCCCCAGCCAACGGAGAAATGGGCAATTCGGAGGGTTGGCATGAGGAGCTGGACAGGAAGCTGTCCCAAAACAGTCTTGGTGAAATGGCTAAGCTGGGCAGTAAGACCACTTTGAATCGCAGGgACACATACCGGCGTCGTCAGATGCAGAGGTCAGTCACTCGTCAGATGTCCTTTGACCTGTCCAAGTTGTTGGTCACTGAGGACTGGTTCAGTGACATCAGCCCTCAGACCATGAGGAGACTCCTCAACATTGTGTCTGTCACAGGTCGATTACTGAGGGCCAATCAGATAACTTTTAACTGGGACCGGCTGGCATCCTGGATAAACCTGACTGAGCAGTGGCCCTACCGCACATCGTGGCTTATCCTGTACCTGGAGGAGACTGATGGAATTCCTGAACAGGCCACACTCAAAACCATCTATGAAAGAATTTCCAAGAACATTCCCACCACTAAAGATGTGGAGCCCTTGCTGGAGATAGATGGAGATGTGCGGAGTTTCGAGGTGTTCCTCTCCTCTCGCACTCCAGTGCTGGCTGCTCGAGACATCCGCACCTTCCTCCCCTGCACAGTCAACCTGGACCCTAAGCTCCGAGAGATTATAGCAGATGTCCGTGCTGCTCGGGAGCAGATGAACATGGGTGGGGTTACATATCCCACACTGCCCCTGCAGGACCCTGCTGTTCGCCCCACATCCATCTACAGTCAGCATTCCTCAGCCTGCTCGCCTACTGCCTCATACAGCGGGCCATACAATGTGACCGGTGTGTCCCCTCAACCCCACAGCGCCTTCTACAGCGGCATAGCCGGCCCTCAGCACCCCTATTACAACAGGCCTTATTTCCCCCACCATGTTTATGTGCTGCCCCGGCAGTACACTGGCAGCTCCCATCCCACTCACATCCCTGCACCACCACGCCCACTCATTAAAGCGACCCATCCCAGGGAACCTAGCTCTGCATTCGGCACTGCTTCTGTGGTGTCAGGCACCCCatctgtgctgctcagctccATGAATACAGACATGGTATGTGAGCGTCTCAGAATGATAGAAGGCATCGACCAAGGCATGCTGGCCCAATACACTGCCACCATTAAGAAGGCCAATGTCAATGGACGGGTTTTATCCCAGTGTAACCTGGATGAGCTGAAGAAAGAGATGAACATGAACTTTGGAGACTGGCAGCTCTTTAGAGGAATTGTGATGGATTTGCGTCAGTTGGAGAACCAAGTCCTGCATGAAGAAGCCCCCAGCGAGCAGGGCAGCAGCATGGTGGGTCACGGAGAGACTAGTAGGAATCGTGGTACTTCAGGCCATGGAGGACCTGCTAACACTGATACCTCACCTATGTACAACTTCAACCTTAGCTTTGAGGAGCTCTCTAATGTGGGCCTGGATGAGCTTCAGAGGAACCCCAATCCTCCATGGATGAATACTACACACCGCACACCCAGCATGTCCAGTCTGAACTCTCAGGAGTCCTCCAATGAGATCTGCAAACTAACTGACAAGCAACAGGCTGAGTACCGCAATGCCTACCAAGAGTACATTGCCTCAATGGCGCAGCTTGAGGCATCAGGCAGTGGGATGGAGAAGCCTGTGCAGCCCCATCCAGGCCAGTTTATGCACTCCAGCTCGGATGATAAGAATAAAGATGGATGTGATCAAGATGGTCGCAAGTCCTACTCTAAGCGAGCTGGTGGAAAGCCTGCGGTGGATGCAACTGATTATGCTTCCACTGAAGCTGCCACTCTAGACCCCATCAGCGAGGAGGACGAGAAGGTTGACCACGGCTCGTCCAAGTCCCTGCTTGGACGCAAGTCCTCTGCAGAGAAGCTGGGCCTCTTCCAGAGTGCTGACCTGAAGCTGAAGGCTGCAGGAGGACTGCGCTACCAGAAACTGACCAGTGATGATGAAGAATCAGAAGAGTCTGATAACACCCCTCTGATCAAGGATGGCAAGAAAGTAGAACCCAAGCGTAGTGAGACTGAGGATTCATCTTTAGCTAAGGGAAAAGAGTACCTCTCTGACGGCATGCTGGATAAGAAGGACTCGTCTGATTCAGGCGTCCGCTCTAACGAAAGCTCACCTAATCATTCTCTGCAAGACGAGGAGGCTGACCTGTCTCAATCAGAGAGGACCAACCTTATAGAGCTAGATGAGGAGAGCCTAGCCCGCAAGAGAGGCCTGCCTAATAGTTTGAGTGGCCTCCAGGATCCGGCAGTTGCACGCATGTCGATCTGCTCTGAAGACCAGTGCAGCCTCCTGGCCAGTAGCCCTGAAGAAAGCTGGCCTTCCTCTAGAAGCTATAACCTCAACCGCACTCCCAGCAACAACACCctcaacaacaacaccaacgcCCAGCAGGGGAACCGTCCACGCCAGCCAAATGAAAGTTCCAACACCACTGGCAGTGAAGTCATCGTAACCCCTGGGTCCAGCACTACCTCCACGACCACCAcctccacatccacatccaccaCCCACAATGAGAATGTACGTGTAGTGCACTTGAAGAGAGGCCTGAACCCTGGAGACCCACCTGAGATCTGCACTGTGACCTCTGACACAGTAGTCTTCAGCGAGGAGCGCGAGAGCATCCTGTGAGAACCTGGACCCTGGTCCTGGCAAAGCCCCTGTCATGTTTTAGACATGCGGTGCTGCTCTCAAAATTTAGATGTTTGGTGTTGTGATGCATGCTCGGTGGAATGTGCAATCCTGATGGTTCAGTGATGTCTCTGTATTTCAGTATTGAATAGTGGTAGTCTGTCCACTGTAGTTTACCTACATAAATGCTGCCTACATCCTTGTTTTATCAGTTATTTTTAGAATcaactttaaatgtatttaatagtcctttttgtgaaatatacagttAACAGTATTACTGCACTAAATCTGTCTACTAAAATAACACTGCTAATTGTGGGCTATAATTAAACACATCAACTAACCCTTAGTTACTCCATCAGAAACACAGTGTCAAATAAACTGACCATCATGCTCATTGTTTAATCAGTTATGTAAcactgttgtgttgtgttgtattgaGTGTCAGCTGCATGCTTCCTGTCAAAATATGAGAGGTTTTGCTTAAACTTTAAACTCGGGACTAAAAAAAAGTCCTTCCTCTAAAGCCATCTCTTATGGTTAGAGGTATTAATTGTTCAGGCACACTATGGATACTGACCAAGAGTTTATAAAGTTTAAGAAACCTTGAAGAGCTTTAGGAGCAATGTCCTGCATGTGTCTCATTGCATTAAATGTCAAAAGTGAAACAACATAAGACGTTGCATGCACTAAGCTGTAATTTTGTCTGTTTACTTGTATTAGCGGcctaaggcaaagaagtggatgTGACAACTGAACTGTCTACCACATGGAgaaaaataaactatatataatgaCAGAA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005770 late endosome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030165 PDZ domain binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347680 lncRNA upstream 43300 10681310 ~ 10681571 (+) False LOC117599733
TU347670 lncRNA upstream 47736 10675680 ~ 10677135 (+) True G293445
TU347646 lncRNA upstream 80719 10643500 ~ 10644152 (+) True G293427
TU347623 lncRNA upstream 115025 10609626 ~ 10609846 (+) True G293411
TU347592 lncRNA upstream 163855 10560797 ~ 10561016 (+) True G293380
TU347766 lncRNA downstream 276075 11018406 ~ 11021310 (+) False G293528
TU347769 lncRNA downstream 276075 11018406 ~ 11024973 (+) True G293528
TU347773 lncRNA downstream 276075 11018406 ~ 11021310 (+) False G293528
TU347777 lncRNA downstream 276075 11018406 ~ 11021310 (+) False G293528
TU347765 lncRNA downstream 276585 11018916 ~ 11021310 (+) False G293528
XM_026923786.2 mRNA upstream 6347 10683032 ~ 10718524 (+) True mboat2b
XM_034313662.1 mRNA upstream 42207 10681325 ~ 10682664 (+) True LOC117599733
XM_026922934.2 mRNA upstream 53237 10649125 ~ 10671634 (+) True asap2b
XM_026922707.2 mRNA upstream 88642 10619216 ~ 10636229 (+) True adam17b
XM_026923072.2 mRNA upstream 106609 10610127 ~ 10618262 (+) True ywhaqa
XM_026923831.2 mRNA downstream 286232 11028563 ~ 11034887 (+) True rnaseh1
XM_034313947.1 mRNA downstream 325133 11067464 ~ 11116680 (+) False myt1la
XM_026923751.2 mRNA downstream 325472 11067803 ~ 11116680 (+) True myt1la
XM_026923754.2 mRNA downstream 325472 11067803 ~ 11116680 (+) False myt1la
XM_026923753.2 mRNA downstream 325472 11067803 ~ 11116680 (+) False myt1la
TU347333 other upstream 563120 10158955 ~ 10161751 (+) False LOC117599798
TU347160 other upstream 774140 9903750 ~ 9950731 (+) True G293016
XR_004580138.1 other upstream 1563970 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 1727875 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 1833131 8891668 ~ 8891740 (+) True trnak-uuu_18
TU347771 other downstream 276585 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 401556 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 402608 11144939 ~ 11145012 (+) True trnai-aau_2
trnai-aau_3 other downstream 403660 11145991 ~ 11146064 (+) True trnai-aau_3
trnai-aau_4 other downstream 404703 11147034 ~ 11147107 (+) True trnai-aau_4

Expression Profile