RNA id: XM_026923482.2


Basic Information

Item Value
RNA id XM_026923482.2
length 3264
RNA type mRNA
GC content 0.47
exon number 10
gene id zdhhc14
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14311216 ~ 14342712 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTCTATTGGGATTCAGCCCATTTCCTTCATTGTGGGCAGTGAGTGcaagctgtgtgtatgtgtgtgtgtgtgtgtatatgtgtgtacacaATACAGGATGTTTTTAAGGGGAGGACTGCGCACTCCAGACTCCTCTCTGTTCGAGATGTGATTTGTGAAGCCCAAGCTGCAGGATCAGACACCAGCTGAGTTGAAACAGAAGCCTCCATGTGCTACAGACCCGCATCTCTGTGGAGCTGATCATCTCTGAAGCGTCGTTTTGTGTGGAGCCGGAAAGAGTGACAGCATTTTGCAGCCTGGTTGTTAAATGAATCCCAGCCGGCAGGCAGACGGAGCTCAGACAGCGGATGTAGGAGGACACTAGAAGGACGGGGGTGCTTTCCTGGGCTGGAATAAACAGCGAAGTCTCTGCATGGATAAACAGTGTTATCTCTTCACTTCACAGCGGTACAGATGCCAGAAATGGAGGAGCCCATAGACGCAAAAATCGTCCTTAGAATTTCTCCTAGAATTTCTTTCCAGTACCTGCTTTCATCCTCTAGCTGCTTAGATCCTGATGGAAATCAACACACTGGATTATAAAGCTGCAATCAAAGCATGGGAGTTGGATTCATTTCTCTTGTCTGGATTTCCATTAATGATTTAAGGAACTAATTGTCTATAGGTGCTATTAGTTCACTGAATCTATTCCTCACCCTGAATCTAATATGGACAGAATGATAGCATTGCGGTCATCTCTTTGGCTCTGATAACGCACACATTTACTCCATCTGTTCATCAGGAGTGATGCTTTTCCACATGACGCCTCTGCATGCAGACGTTCTGGCTTTCTACTATTTTAAATCAGGTGTTTGCTGAGGAATAAACAAGACCCGAGACATGCATCTTGGACTGGATGAGAGCAGGGAATGTCAGTACAATCAGATCTGCACCCATCATAACTCCTCGTCCATGGAAACCCCGCACACCAAGAAGAGGAGAGTGAAGAGAAAGTGGCAGGTCTTCCCAGGCCGGAACAAGTTCTACTGCGATGGGCGGATCATGATGGCAAAGCAGTCCGGCGTGTTCTACCTCACCATGGCGCTGATCCTGGTGACTAGTGGGCTGTTCTTCACGTTTGACTGTCCGTTCCTGGCCTCTAACTTGAGCCCAGCCATTCCAGCCATCGGTGGTGTGCTCTTCCTTTTCGTTATGGTCATGCTGCTCCGTGCAAGCTTTAGCGACCCCGGGGTTCTGCCCCGAGCCACTCCAGACGAAGCAGCCGATGTAGAAAGACAGATAGATGCAGCTAACGGAGTGAGTGGTGCAAGCTCACGGCCTCCTCCCAGGACCAGAGAGGTGCTAATCAATGGCCAGACGGTCAAACTGAAATACTGCTTCACCTGCAAAATCTTTAGACCACCAAGAGCCTCACACTGCAGCCTGTGTGACAACTGCGTGGAGCGTTTTGACCACCACTGCCCCTGGGTAGGCAACTGCGTGGGAAAGCGAAACTACCGCTTCTTCTACCTGTTCATCCTCTCGCTCTCCTTCCTCACCATCTTTATCTTCGCCTTCGTCATCACCCACGTCATTCTGAGATCCAATCGGACCGGGTTTCTCACCGCCCTCAAAGACAGCCCAGCCAGTGTTCTGGAGGTGGTCGTGTGTTTTTTCTCCATCTGGTCAATCGTGGGTTTGTCGGGTTTCCACACCTACCTGATCAGCTCCAACCTGACCACGAACGAGGACattaaAGGTTCATGGTCATCCAAACGAGGCAAAGATAACTACAACCCCTACAGCTACGGCAACATCCTCACCAACTGCTGCGCTGCTCTGTGTAGCCCGTTACCACCCAGtttgattgacaggagaggtcTTGTAGAACCAGACGCCCCACAGCCAGCAGCTCAGTCAAATGGGACTAACGCATGTCCTACAACTCAGCTCCAGAGTCACATGTGTCACCAAGATCAGTGCATCCAGAGCACCAAATTTGTTTTGCAGGCTGCCACCACACCTCTCCTTCACGCCCAGCCGGTGCTGCTGAGCGGAGGCGCTGTCCTGCAGGTCAAACCGTCAGTGGGTGTGCCATGCTCACTTCACCCCTCGCTGCCCTCCTCCACCACCAGTCTGGGCTGCGGAGGTGAGCTTTTGGCTTTACATGACCCTGAAAGCCTCTGCCACCACCACCAGCTCAGCCACGAGGCCTTTGCCAGCCCAGAGGAGATGCCCTCCCCGGCCATGGCGCTGCCCTGCGCTGCCCACCTGGCGCAGCTGTACGACCCGGCCAGCCAGGACTCGCTGCACGAGGATTCAGTACGCGGCCTGGTGAAGCTCAGCTCCGTGTGACGACCCCAGGAAGCGCAGAGCCAAAAGCCATAGTTTAATCTTTATAGGACGATAAAACactttcagtgacattttacCTTTTCAGCCACAGCAGGATATAACAGCCTCAAAAAAAAGGACCAAGAGCAGTCTTCCAGCTCGTCTGTGTGCTTACGCAGGAGAGCTGATCTATTAGCGCTCTCGCACTACGCCTCAAAATGAAATCTGTATTAAAGGACACTTTatcaaaacactgaaaacaaaagatatcttagcaaatgaaaatatcttggaTAAAGGCAAATATATCTAACACTTCTCATGATGACActgcaataaaacaaacataaaattacTAAGCCTATATCAGacaattttactcatttcaagcgtGAAATTATATTCTTTTGGCTGGAAAATGTTCTTGGTTGATTTATTTGTAGAACGAAGCAAATGCTAATAGAACAAGGCGCTTTAAGTTTGAGAAAAAATGACTAGAAATATGCATAAtgatcatatttttgttttatcataatatgataaatacagtgctgttgaattcttgactctgattggttagaaggtgtttcTGAAAGTAGTGCCAGCTACAAGGCGAATCACTGATTTATATTAATGGACTCATTAtaatacgctatcgtttctattGTAATGGCTAATTAAGGGACGagctacataatctaagactaataattaacagattaaacagattaaagattGCTTTTTAACAAAgggaaaatgtataatcattgacgTGGTGACGTTTTTCGGTGAGAGATGTTAATTTCCAGCATCGGCACTTTGTAACACCAAAGGAGATTCTTCAAGATGGaggagtttgtgtttttaagtttctcggtaacataaacttcaagagagaactaaagagaggctggttatggaatgactgtttatagctgctataacgtga

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU350095 lncRNA upstream 6535 14302661 ~ 14304691 (+) False arid1b
TU350097 lncRNA upstream 7647 14302661 ~ 14303579 (+) False arid1b
TU350096 lncRNA upstream 7647 14302802 ~ 14303579 (+) False arid1b
TU350104 lncRNA upstream 51236 14259536 ~ 14259990 (+) True G295597
TU350090 lncRNA upstream 73517 14237487 ~ 14237709 (+) True G295590
TU350207 lncRNA downstream 39834 14382546 ~ 14382752 (+) True trnas-gcu_11
TU350290 lncRNA downstream 214017 14556729 ~ 14574795 (+) True G295766
TU350316 lncRNA downstream 284390 14627102 ~ 14631160 (+) True G295787
TU350355 lncRNA downstream 321381 14664093 ~ 14664381 (+) True G295818
TU350359 lncRNA downstream 322820 14665532 ~ 14665767 (+) True G295822
XM_034313902.1 mRNA upstream 7577 14240519 ~ 14303649 (+) True arid1b
XM_026923305.2 mRNA downstream 14568 14357280 ~ 14367279 (+) True galca
XM_026923391.2 mRNA downstream 24996 14367708 ~ 14376408 (+) True ak7a
XM_026923393.2 mRNA downstream 24996 14367708 ~ 14376080 (+) False ak7a
XM_026922943.2 mRNA downstream 60905 14403617 ~ 14421827 (+) False papola
XM_034313726.1 mRNA downstream 63858 14406570 ~ 14423172 (+) True papola
TU349793 other upstream 290542 14017638 ~ 14020684 (+) False LOC113532127
trnaf-gaa_29 other upstream 756279 13554875 ~ 13554947 (+) True trnaf-gaa_29
XR_004580084.1 other upstream 765588 13468727 ~ 13545638 (+) False col12a1b
XR_003403290.2 other upstream 2732633 11568737 ~ 11578593 (+) False pak6b
trnai-aau_16 other upstream 3150389 11160764 ~ 11160837 (+) True trnai-aau_16
trnas-gcu_7 other downstream 35311 14378023 ~ 14378104 (+) True trnas-gcu_7
trnas-gcu_8 other downstream 36066 14378778 ~ 14378859 (+) True trnas-gcu_8
trnas-gcu_9 other downstream 37781 14380493 ~ 14380574 (+) True trnas-gcu_9
trnas-gcu_11 other downstream 39826 14382538 ~ 14382619 (+) False trnas-gcu_11
trnas-gcu_13 other downstream 41594 14384306 ~ 14384387 (+) True trnas-gcu_13

Expression Profile