RNA id: XM_026923730.2


Basic Information

Item Value
RNA id XM_026923730.2
length 5031
RNA type mRNA
GC content 0.44
exon number 17
gene id fmn1
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10503334 ~ 10527440 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTGGTTCCTGTGCGACATACGGATTAAAAGCAAGAGGACCTGCTGATTCTACTGGTATAACTCAATCTAAACTGGAGCAAAGAGACGACTGAGTGAAGGTAAAAGAAAATCACTTGGAGCATCGGTGTCAATTGGAGAATTAATTTACTCCCAGCTCCAATTAAACATTTGTGGATTTTCATTTGTATCTCTCATTTGGACtgaaaagacaaacagagattttgcatcattctcataatgtgatttttttttccttgaactCATCCTTCTGGAAATTTCAGTAAAAATCAGGATTTCAAGATGACTACAATCATACTGCAAAAGAAAGATTTTGAGAACAGTTCTGCTGAACAAACACATGTACAATAACAAAGCTTGATAACAGATGTTGTTGACAAGTTTTAGAAGCCTAAtacaacatttatttagcaaagGATTCAAAAATCAAGTTCTAGCTTGAATGGGCATGCCAACAAAACTGAATCattgcaaatgcaaaaataaaaaggaactTTTCTGCTTAGTGGAATTTTGAAGTCTGCATGTCACCCATAATATACTTGCAAATAAAGTGCCTTGCCTGAAAAAATGGATAGTTATCCTGCTAATTCATTCTTTAACAACTTCTCCAACCTTTTCAACCGTATAGAGAAAACCGAAGACACACCAGTTCTTTCATCTTTTCGTTCCCTGTCCGAGAAAGACACTGAAACTCAGAACAGCAGCATCCAAAAAACTCACAATATTAGATTTGATAATGATTCACCTGTTGAAAAGGATCTCAAAGCAATGGATGTTTCTAGTCAAATTAATAGCAGGACGTCATCTGAGACAGAAGTCTTAACAGAGACAGAGGATGTTTTAGCAAGAACAATTCAGCCTAGAGATGAATGCAATAACAATCTGGGTCAGAGATCATCTTTGGAGCAAATAAGGGATAATAATGTTGAAACTCACAGTAATACTAGCATGGACCGAGATGAAGTCAAAACTCATGAAACACCAACTCATACTGGAAAGGAATTCTTGGACATGGACCTGCAAGTCAATGTGGATCAAGGCAATTCATGGAAAGATTCATCCTTGACAAGTCAGGGTGACCAAAGGGTGGCAGATggccaggctgacctgctttcCAAAGCATTTAGCCAGGAATATAATGATGCTAGCCTGAGTAACGAAGCACCAGAAGAGAGCCACAGAGGTGGAGATCTCTCAGACTGTATCAGCAAACAGACTGCAGAGGGATTACCAGACAAAGTTATGAGAGATGGCAACACAACTAATATCACCAAAGAAGAGGTATTATCTACTGCACAGTATGAGGGTAAATGTCAAGAGTGGACAAATGAGGTTAAACATATGCAAACCAAAACTCAGGAACCAGCATGTATGAACAAAAATGAGGAACTATACACAGAGAGTACATTTCAGACAAGTTCTACAGACATCAACAATCCAATCTCTACTGGAGCAGTCTCAGATCAGGCAGATGAGGCCCTGTCTACTTTTAAAAGTAATCTGGTTATACCTAATGGAGACTTTGGTACAAATACAAAGTGCGCACACTCAGACACAGGCAATGAGATCCAACCAAAAGTGGAATTCTGGAGCTCCTTAATTCCAGACACATGTAATGGATGTCATGTGGAATCAGACAGGCAATCCAGTTCAGAAAGTGGAGACACATTCCTCAAAGTCGAGTCTGatcaaatgttattaaaattagAACCAACAACTCCAGACAGTCTCAATGAAACACAGAAGGGGAGAGGAACAAAAGATGTACAAGAATTGAGTAAGCTAGAAATGAAGAAGAATGAAGAACAAGATGGAGGGACAATGATGAAAGATGAAAGTGATAACCTGGTACAAATAGAGggagaaaacaaagaaagagtgatggaggaagagaaaaggGATATATTACAAGAAGACAGCAATTCAGAGTCTTTAGATACTCCCTCAGCTCCTGGGTACCTAGAAGAGCCACCAAAAACTGAAAATGCTTCTAGGCCCACCAGAAGAGTAACCTTCTCTCCAGGCCTAAAGTTGCAGAAACCTCCCCAGCTACCCACCATCTTTAGTGGACTGAAAGGGTTGAAAAAAGAAGTGCGTGACAAGCCGAAAAAAGCATTAACCCTTGAACAACCTACGAGTCCTGTCCTGATGAAACAGGCCTCTGTTAAACGGGCACTTTTCTCTGAGAAACATTCCAAAAGTGAGGTTAAAGGAAGCATCCTTGAGCAGCTCTCTCAACTCCTGAGCTTTGATGCTGGCAAAGTAGGAGCAAAAAAAGCACAGGAACCCACAACAAGTCCTCCACTCTCACCCAGCAGCGAGGCCCCAGTAGCAGAAATGCCTCCCGTAGAGGAAAGTGTGAAGGGTCCTGATGTTGCGTCATCAGAGGAAAGTGGCAAATCAACAAATACAGAGACAGCCCTCAATGCTTTCAAGGCTTTCTTTACCCCTAAACCAGCTAAGAGGGACACCTCAGACCATATCGACCTGGATGCAGTAAAGAGGGCATTCAACCCAGAGACAATCCGAGCTATCTTTGACAGAAATTCTAGCAAGTCTCCAGACAACAAGAACATCTTTGATACCAAATCTCCCGAGAGCGAGGAGAGGACCCCGGGACGTCTGCAGGCCGTCTGGCCCCCTCCAAAGCCCAAAGACAAGGAGGAGAAAATTGGGTTAAAATACACAGAGGCTGAGCATCAGGCAGCTCTTCTACATCTAAAAAGGGAGTGCAAAGAAGAGTTGGAGGCATTAGAGGCGGATTTTAAGCTCAAGCTCTACCACCTCAGAGAGGAGAATGAAGAATCTGTGTCCAGACTGCAAGCAGCAATTGCGGATCTGAAAAAGGCTGCCAAGTGCTCACATGGTGAACTCAGAGATGCGGCTGTGTCAACAGAAGACAACTTCACACCTCGCAGTTTTCGCACTGTGTGCATTCAGACAGACCGAGAGACTTTTATTAAGCCTGTGGAGGAGCCAGAGTTAAGCAAAGACCTTTGCCCTCAACAAAATGTGCCTAAAAAACTTGATCTTGCATCAATCAGCCGTAGCCTTTCGGGCAAACAGGAGACTGGTCTGCCTCCATTACAGCCactgccaccaccaccaccactgtcTGTTCAGTCAGGATTTGATAATGTAACTTCAAAACCTTCACCATCACTGCCTGGTCCTTCTGAGTGTTATTCAAAACCTACTCAGTCAGAAAAGTGCCCGCCACTCACACAAGACTATGGcccacctcctccaccaccacctccaccaacAATCAGTACTGGTCTCTCTCCTCCACCACCCCTACCAGGCCCTGTGCCCTCTCCTCCCACTGGAGGTGGATTGTTCCTCTCTAGAGCTGAGGAGAGACCGCAACGAAAGCCAAGAGTGGAACCCATCTGCCCAATGAAGCCACTCTACTGGACGCGGATACAGATTCAAGACAGCAGAAATGATAATTTGTGGAGCTTGCTGAAGGAGCCAGCCATAATAAATACTAATGAGTTTGCCGAGTTGTTTGCTAAAATGGCTTCACCTGCCAAAAGGAAACCCCTATCTGAGGCCTACGACAAGACAGCCAAAGCCAAGAAGATCATTAAGGTGTTGGACAGCAAGCGTTCTCAAGCTGTGGGCATCTTAATCTCAAGTCTTCACCTGGAGATGAAGGACATACAGCAGGCTGTTTTGATGATGGACAACTCTGTGGTTGATCTGGATGCTATTGAAGCCCTGTATGAAAATAGAGCTCAGCCTGAAGAGTTGGCGAGAATAAGAAAACACTATGAAACCTCAGATGAAGAACATATCAGACTGCTGGACAAGCCTGAACAGTTCCTGTATGAGCTCTCTCTGATTCCCCAATTCTCTCTGAGAGCACGCTGTATCATTCTCCAGTCAACATTCACTGACGCTGTTGCATCTATCCAGCGCAAAACAAACATGGTTCTACAAGTGTGCAAGGGTCTActggagagagacagtgtgagagaggtgCTGGGGCTGGTCCTTGCCTTCGGGAACTACATGAATGGCGGGAGCAGAAACCGAGGCCAGGCAGATGGCTTTGGCCTCGAGATTCTCCCCAAGCTCAAAGATGTTAAGAGCAGGGATAACCGCATGAGTCTGGTGGATTACGTAGTGTCTTACTACCTACGCAATCTTGATAAgAATTCTGGGACAGAAGACTGTGTGTTTCCATTGCCTGAGCCTCAGGATGTCTTCCTTGCTTCCCAAGTTAAGTTTGAAGACCTTTCCAAAGAGCTCCGGAAGCTGGGCAAAGACCTTGAAGGTTGTGAGAAGGATGTCCAAAGAGTGTGGTTAACATCAGCTCAAGAATACATCCATCCCTTCAAGGAGAAAATGGAAGCTTTTATCGCCAGTGcCCAAAAAGAACAAAGAGCAACTGAACATCATCTCATATCTGCCCAAAAAAGCTTCCATGACCTGGTGCAGTACTTTGGGATCAGGCCACGTTCTGGCGAGCAGGATGTCCTACCAGGCCATGTTTTTATGCTCTGGTTTGAATTCTGCAATGACTTCAAGACCAGATGGAAGAGGGAGAACAAGGCCATTTCCAATGAGAGACTGAAAGAGGCCCAGCAGTCAGTGCACAACATCACAGCAGACAAAAAAGTGGAGACCAGGCAGGTCCATGCAAACGGCCTGAAGGAAAGACTGCGTCTAAAAGAAGCAAGCCTATCGAGCACCTGAGACACAACAGACCCTCCACAATGATAGTGTAATGTTTATATGACTCAATATAACtcaagcctgtttttttttttttcaaccttatTTTCATTCTGTATCTGCATGTAACTTTGGCTTGTTTCTGCATAAGAATCAATAATAATTCAATAGTTTTGTGTTCTTGTGCTGATTAAATGCGATGATTAACATGAGATTTGAATCAGTTCACcccaattcaattttatttttgtagcacttttaacaatagacattgtcataaagccgctttacagaaatgtagatttagatccctaatgagcaagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580103.1 lncRNA upstream 292336 10198849 ~ 10210998 (+) True LOC117599717
TU347278 lncRNA upstream 439323 10063765 ~ 10064011 (+) True G293110
TU347253 lncRNA upstream 464979 10036451 ~ 10038355 (+) True G293095
TU347065 lncRNA upstream 634725 9868149 ~ 9868609 (+) True G292929
TU346860 lncRNA upstream 886743 9613425 ~ 9616591 (+) True G292754
TU347561 lncRNA downstream 9524 10536964 ~ 10537640 (+) True G293350
TU347551 lncRNA downstream 24801 10552241 ~ 10553007 (+) True G293345
TU347592 lncRNA downstream 33357 10560797 ~ 10561016 (+) True G293380
TU347623 lncRNA downstream 82186 10609626 ~ 10609846 (+) True G293411
TU347646 lncRNA downstream 116060 10643500 ~ 10644152 (+) True G293427
XM_026923090.2 mRNA upstream 91186 10383664 ~ 10412148 (+) True aven
XM_026922696.2 mRNA upstream 125110 10374563 ~ 10378224 (+) True emc7
XM_026923687.2 mRNA upstream 129333 10366168 ~ 10374001 (+) False katnbl1
XM_026923688.2 mRNA upstream 129333 10366451 ~ 10374001 (+) True katnbl1
XM_026923689.2 mRNA upstream 129333 10367434 ~ 10374001 (+) False katnbl1
XM_026923072.2 mRNA downstream 82687 10610127 ~ 10618262 (+) True ywhaqa
XM_026922707.2 mRNA downstream 91776 10619216 ~ 10636229 (+) True adam17b
XM_026922934.2 mRNA downstream 121685 10649125 ~ 10671634 (+) True asap2b
XM_034313662.1 mRNA downstream 153885 10681325 ~ 10682664 (+) True LOC117599733
XM_026923786.2 mRNA downstream 155592 10683032 ~ 10718524 (+) True mboat2b
TU347333 other upstream 341583 10158955 ~ 10161751 (+) False LOC117599798
TU347160 other upstream 552603 9903750 ~ 9950731 (+) True G293016
XR_004580138.1 other upstream 1342433 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 1506338 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 1611594 8891668 ~ 8891740 (+) True trnak-uuu_18
TU347771 other downstream 491476 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 616447 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 617499 11144939 ~ 11145012 (+) True trnai-aau_2
trnai-aau_3 other downstream 618551 11145991 ~ 11146064 (+) True trnai-aau_3
trnai-aau_4 other downstream 619594 11147034 ~ 11147107 (+) True trnai-aau_4

Expression Profile