RNA id: XM_026923753.2


Basic Information

Item Value
RNA id XM_026923753.2
length 5376
RNA type mRNA
GC content 0.48
exon number 23
gene id myt1la
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 11067464 ~ 11116680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGCAGCTCCCCCGCTCCTCCActccctctccctccatctctccaagTGCTGGCGGAATACAGTGAGCTCAAACAAAGAAAGATTGATAGAACAAGGGAAGAGAGGAGCTTAAGAGTGAACAATAAGggaggatagacagagagagagagggagagaaagaaagagagaccaTCGCAGCATTTCAGGCTACAGTAGAGAGaggaggcagacagagagagtgtgtgagagagtcgCCATTTCAaaaATGATTTTTGAGGAAGATCACTGTCACTGAACACAATATAAGGGACATTTCAGCCAAAACCCAGGAACGCAGGAGGAGAGCTTCAGAAACCGCTACCCCGCCCTCACTCAGCTAATCTCAGATGGAGGTGGATGCAGCTGAGAAGCGCCATCGAACACGTTCCAAAGGTGTGAGAGttGCCGTGGAGACTGCAGCACAGGAGCTGTTCAGCTGTCCCACACCAGGTTGTGACGGTAGTGGACACGTGAGGGGCAAATACGCCAGGCACAGGAGTGTTTATGGATGCCCTTTGGCTAAGAAGAGGAAAGGCCAGGAGAAACCTCTGCAGGAGCCAGCTACCAAACGGCGGCCGTTTTTAACCATGGCTGACGGAGAACCGGTGATATACGACAACTACGAAGCTATGGaagagagtgaggagagagaacaggaagagTTAGATGACGATgtggaagaagaggaggaggaaggagaagaGGGAGACGACGAAGAAGAGGAGGGCTCTGAAGACAATGATGAGGCTGGtgaggaggaagatgaggaagatgaagaggaggaagatgaaggagaagctGAAAGGGAGGAGGGAGACGAGGTAGAGCAGATGGAGGAAGAGGtggaggaagatgaggaggtGGTGGAACAGGATGGAGATGATGAACAAGAGGAGGAGGgagaacaggaagaggaagatgaagatgagcatgaggaagaggaggaataTGAAGAGCAGGCTCATCACCATGAGAATACTTATTCCAGTTGTGGACAATCAAAGCCCAGCCAGATGTTTGAgaaagacaacaacaacaataaccacACAACCAATGAAGAATATGAGAACTATGATGAGCTTGTAGCCAAGTCCCTGCTGAACCTGGGCAAAATAGCGGAGGACGCCGCATACCAGGCTATGACAGAGTCCGAGATGAACAGCAGCTCGTCCAACAGTGCCGGTGAGGATGACgacgaggatgaggaggatggtCCTGAGCACAGAGGACGGAAGGGCGAGTTAAGTGTGGACCTGGACAGTGACGTGGTACGGGAGACAGTGGACTCACTGAAGCTGCTGGCACAGGGTCACGGAGCTGTGCTGCCAGATGATGGCTACCCTGAGTCTGCTCCTGGCCAGGAACACCTCAATGGCCAGCCTGAAGAGAGCGAGGAGGGCGTGTGCCTTAGCAGTCTGGAATGTCTGAGGAACCAGTGCTTCGATCTGGCACGCAAGCTAAGTGAAACACAGCCACTCGAGCAGACAATGTTGCAGAACCAGGCTGAGCAGCAGCACCTACAGGCCCAGATGCACCACCACCACCTGCCTCGCTATGAGAGTTGCCAGCAGGCCCCGATGGAGCCTCAGAGACCAATGGAGAGGAGCTACTCAGACATGGTGAACCTGATGAAGCTTGAAGAGCAGCTCAGCCCAGCGTCCAGGGGTTACCCCGCCAGCTGCGCCCAAGAAGGGGATGAAGACACAACATCTGTGGCATCAGAGCATTCAGACGAGGCCTTCGACATCACCAAGGGCAACCTGTCACTGCTGGAGAAGGCCATAGCTTTGGAGTCAGAGCGTGCCAAGGTCATGCGTGATAGGATGGCGTCGGAGCAGGCAGTGGCTCGGAGGGACCATCAGCGGCTACATGGGGAGCACAGCCCCAGGCAGAGTAGTGGAGCTGAGGAGCGTAAAGCCCGACTACACCATGATGGGGCAAGAAGAGCCTATTACCCTAAAGATCCTTCAAGaggtgagaaaaaagagagtaagTGCCCCACCCCAGGATGTGATGGCACAGGCCACGTCACAGGCCTGTATCCACACCACAGAAGTCTGTCCGGCTGCCCTCACAAAGACCGCGTACCACCAGAAATTCTTGCAATGCATGAGAATGTTCTAAAGTGCCCGACGCCTGGCTGCTCGGGACGCGGCCACGTTAATAGCAACAGGAACTCGCACCGCAGTCTCTCAGGATGTCCTATAGCAGCCGCTGAGAAGATTGCTAAGGTTCAGGAGAAGCACCAATCAAGTGACGGAACCAAGTCCAATCAGGCATCTGACCGCGTGCTGAGgcCTATGTGCTTTGTGAAACAGTTGGAGATCCCACAGTACGGTTACAAAAATAACGTCTCCACCAGCACGCCCCGCTCCAATCTAGCCAAGGAGTTGGAGAAGTACTCCAAGACCAGCTTCGACTACGGAGGCGGCTACGACGGCCAGCCTCACGCCTACAGCAAGCGCTCGCTCGCACAGAAGAACCACGGACGAGACACTTCACCAAGAGGATACGATGCCAAGCGATACTGTAAGACCTCAAGTCCAGCCAGCAGTACAACGAGCAGCTACGCTCCCAGCAGCAGCGGCAGTAGCCTGAGctgtggaggaggaagaggagggagaggaggaggaggaggaggaggaggaagcagCGCCAGCAGCACCTGCAGCAAGAGCAGTTTCGACTACACGCACGACATGGAGGCCGCTCACATGGCCGCCACAGCCATCCTCAACCTGTCCACGCGCTGCCGAGAGATGCCTCAGAGCCTGAGCGCCAAAGGCCCCGAGCTCCTCGCACAGAGTCCAGATGAGCAGGAGGTGGAGGAGAGCGGGACTCTGGACCTGAGCGTGGGTCGTGCAGGGGGCATGGGCGAGGGCACGGTGCTCACGCCGCTGCAGCCCATGTCCCCCCAACGGCAAGCACTGCTCAACAGCCGCTGCTACCAGATGAGCACAGACTGCTGGGACCTGCCAGTAGACTACACCAAGATTAAGAGTCTGGACGAGGACCATAAAGAGGATGAGCTGGACCCTTTCCAGGAGTTGCTGGAGAATCAGCAGTACCCGAGTGAGGTGTCCCTCCCCAGCCCCAAACATAAATATGCCCCCTgcaaagaaagcaagaaagaactCCTCACACTCTCTAGCTGCCAGTTAGCTGATAAAGGCATGCGCAGTATGATGACAACAAACTCACAGGATTTAAAGTGTCCTACTCCTGGTTGTGATGGCTCCGGGCACATTACAGGCAACTATGCCTCACACAGGAGTCTATCAGGTTGTCCCAGAGCAAAGAAGAGTGgaattaaaatcattcataacAAGGAGGACAAAGATGATCAGGAGCCAATTAAATGTCCAGTGcctggatgtgatggtcagggtcATGTGACAGGGAAGTACGCATCTCATCGCAGTGCATCTGGCTGCCCACTGGCTGCCAAGCGTCAGAAGGACGGTTTCGTGAATGGAGCTCCATTTCCATGGAAATCTGGAAAAACTGATGGCATGACATGCCCCACACCTGGGTGTGACGGCTCGGGCCATGTTAGTGGCAGCTTTCTCACCCACCGGAGTCTCTCTGGCTGTCCCCGTGCCACTTCAGCCATGAAGAAAGCACGAATGACTGGAGTTGAAATGCTTACAATCAAGCAGCGTGCAAGCAAAGGAATAGAGAACGATGAGGAAATCAAACAGCTGGATGAAGAAATCAAAGATCTTAATGAATCGAACAATCAAGTGGAGTCTGACATGATTAAACTTAGGACACaaATCACCACCATGGAGACCAACCTGAAGTCCATGGAGGAAGAGAACAAGGCCATTGAGCAGCAGAATGACTCACTGCTGCATGAGCTGGCTAACCTCAGCCAGTCGCTCATCAACAGCCTGGCCAACATCCAGCTCCCTCATATGAAACCGGTGCCACTGAAAGAGGCCCCTGTTAAAAATTACTGCTGTTTACAGATGCCCCACAGAGAGCCGATGAACGAGCAAAATTTTGACAGTTACGTGAGCACTTTGACAGATATGTATACGCATCAGGACCAGTACCAGAGCCCTGAGAACAAAGCCCTGCTGGAGAACATCAAACAAGCTGTGCAGGGCATCCAAGTGTAGCTCCCTGAGCCACTGCCTCGTTTTTTAAGGGTTTGCTTTATGCAAGCATTGATAagcaaaaagaaggaaaatgaaacaaggaaaaaaaaaaccatgtaaAAAGTATGGataatgattatgatttttgctgctgtaattaattgtattatctttcattatttattattctgttatgcttttgaggggaaaaaatacattaattatttGTTGCCTTGCTTTAACAATGATTACCAATGGCAAATGTTTTGAGGAACATtcatgttttgtacatttttcatatgaCCTGACATAATGTGAtgtactgtttatagctgctaatgtatgcacattttagtgtatatgtatttattaattgtaaacaaaaaacattcattgttttaaaaagcttaacgagaagaaggaaaaacatAGTGTTGAAAATGTGGTATGAGGGAAATGTAAAGGGCAATCAGCTAACATAagcttttccttttaaaaataagagGAATTCAATGTGTACAGTGTAGGTTGTTTAATGTATGTTAAACcacaaatttttttaataatatgaaaGAATTTCATAGCGGTTTGTCATTGTGTTCAGAAAGCAGTTTGCAGCAGTCAGTGTGGGCACTCTATTGAAGTACATGTGTTGGTCTTTgagcttttatttgtttcattttcaaaacttaaaatggataaaaaatggatagacaaaaaaatgtacatttttgtgaaACATCATGACACGGAAACCCACTGGTGCAAATCCCAAGATTGTGAGAGAAATATTTCATAACTTCAACCATCCGTATTGTATATTCTCCAAATGTGATTCCCATTTGGTTAATTCCAATCACTATGGAAAATATTAAGGAGACAATCCAGCATAAATTATGAATTTATGATCGTAAAAACATTAGTGGGTAGTAAAATAGCATATCAGCAATATATGACAATGaatcaatcatttatttagatATGGGATGCAAATGTTCGGGTATATGCAATTTCTTATTGTAAACATCACAGAAAACTGATTAATCTTTTTACTAAATGTAAAGTATTGAGTTTTATATAAATCTTTTACTACAATCATGTTTTAGGATTTAAACATGAGTGATCGAATCCAAATGGATGAATgcatatacattataattttacatttctcaTGTTATGTTTTGCACAGGGACACCTTTGTTTCCATGTTTtgatgttatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347769 lncRNA upstream 42830 11018406 ~ 11024973 (+) True G293528
TU348055 lncRNA downstream 258124 11374804 ~ 11375264 (+) True G293758
TU348116 lncRNA downstream 366702 11483382 ~ 11483590 (+) True G293817
TU348135 lncRNA downstream 422846 11539526 ~ 11539953 (+) True G293820
TU348201 lncRNA downstream 555803 11672483 ~ 11675661 (+) True G293864
TU348210 lncRNA downstream 573972 11690652 ~ 11692331 (+) True G293873
XM_026923831.2 mRNA upstream 32916 11028563 ~ 11034887 (+) True rnaseh1
XM_026922796.2 mRNA upstream 325472 10723563 ~ 10742331 (+) False kidins220b
XM_026922604.2 mRNA downstream 3486 11120166 ~ 11138671 (+) True cep43
XM_034313829.1 mRNA downstream 3486 11120166 ~ 11138671 (+) False cep43
XM_026922607.2 mRNA downstream 3486 11120166 ~ 11138671 (+) False cep43
XM_034313832.1 mRNA downstream 3486 11120166 ~ 11138671 (+) False cep43
XM_026922608.2 mRNA downstream 3486 11120166 ~ 11138671 (+) False cep43
TU347771 other upstream 42830 11018916 ~ 11024973 (+) False G293528
TU347333 other upstream 906052 10158955 ~ 10161751 (+) False LOC117599798
TU347160 other upstream 1117072 9903750 ~ 9950731 (+) True G293016
XR_004580138.1 other upstream 1906902 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 2070807 8993513 ~ 8996996 (+) True G292216
trnai-aau_1 other downstream 27207 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 28259 11144939 ~ 11145012 (+) True trnai-aau_2
trnai-aau_3 other downstream 29311 11145991 ~ 11146064 (+) True trnai-aau_3
trnai-aau_4 other downstream 30354 11147034 ~ 11147107 (+) True trnai-aau_4
trnai-aau_5 other downstream 31421 11148101 ~ 11148175 (+) True trnai-aau_5

Expression Profile