RNA id: XM_026944323.2


Basic Information

Item Value
RNA id XM_026944323.2
length 2423
RNA type mRNA
GC content 0.48
exon number 2
gene id sox7
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7053958 ~ 7057627 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATGCACAGGGAAAGAGTGAATCACTGCTTTCGAGGAGGAGTCCTACCGAGCACACCGTTCTCACCCAAGCCGACAAACAGCCTAGCTCATCACTCAGGACAGGGAAGGACAGACACAGagcagactaacacacacagtcaggtcttACTGGGGCTTTTTTTCTCCCACACCAATCTGCAGGTGAAATCGCACGTGAGCGCAAGTCAGAGCAAAGTTTCTGAGAGAGTTTGAGACTAATTAGCGCAGGTGAAGTTTTGAGATTGGGcagagtgagagcgagagagagaggagtgcgCACATGGCTGCTCTGATTAGCGCATACTCGACATGGCCGGAGAGCTTCGAGTGCGCTTCCACGGATGGAGACGCAGCCGACGGCCGCACGAGCCACCGAGCAGCGGCGGATAAAACCCCCGAGCCCCGCATCCGCAGACCCATGAACGCCTTCATGGTGTGGGCTAAAGACGAGCGCAAAAGACTGGCGGTGCAAAACCCGGACCTTCACAACGCAGAGCTCAGCAAAATGCTGGGTAAGTCATGGAAGGCCCTGACTCCCTTGCAGAAGAGGCCGTATGTGGAGGAGGCTGAGAGGTTGCGGGTGCAGCATATGCAGGACTACCCCAACTACAAGTACCGTCCTCGTCGGAAGAAGCAGCTGAAGCGAATCTGTAAGCGTGTTGACCCAGGCTTCCTCCTGCCCGGCATTGGCCCTGACCAGAGCTCTCTGTCAGACCCGCGAGGTTGCTGTCACCCCCTGGACAAAGAAGAAGAGAGTACTGTCGGTGGGAGCAGTGGATTCTCTTCCCCCAGTGCAACTTTGCCTGGTGTGAGGGTCTTCAGGGACCCTGCAAACTCCAGCAGCAATTTTGACACATATCCTTATGGCCTTCCCACTCCACCTGAGATGTCCCCTCTTGATGTGGTAGATCATGAGCACCCGTCCTACTACTCAGCATCCAGCTCTGTCCCCCCCACCAGCTCCTGCTCATCCTCTGCTTCGGGCCCAGAGGAGCAGCGTCCCACCCCAGCTCACATGGGCAGCCCTCCTCCGTACCACCCCGAGTACTCCCATCAGTCCTCTCTCCACTGTGGTAGCACACATCTGAATCACATCCCCATGCCACACCAATGTAGTGGATCCAACCTTATTCCCACTCCTCCACTGTCCTACTACAGCACTTCGTTCTCTCAAGTCCCAGTGCACCATGGCCTCCAGGGCCACTTAGGGCAACTCTCACCCCCACCTGAGCAGGGTCACTTGGAGACGTTGGACCAGCTGAGCCAGGCTGAACTGCTGGGTGAGGTGGACCGCGATGAGTTTGACCAGTACCTGAACTCCACCAACTATCACGCTGAACAGGGCAGCATGACCGTGACAGGACACATCCAGGTAACACCAGCATCTTCTTGCCCCAGCAGCACCACAGAAACCAGTCTCATCTCTGTACTGGCCGATGCAACGGCCGCCTACTACAACAATTACAGCATTTCTTAAAGAGTGAAACAAACCAATAGACAATAATTTAAACGTCAATACAGACAAAGCCCATGGACTTCAAATGGGTCAGCAGTGTGATTGGCAGATGAACAAAGGAGGAGCGATGTAAAGAGGAAAGGAGAAGCTGCAGGACATGAATGGACACCTCAGGGATGCATAGATAAATGCTCTAAAGTTCATACCCATCTTTGTTTCCaaaaagagagaggatgagaatAAAGTGACTGGACTAACTGTTAGTCCTGCTGAAACGTTCTCAGACTTTGCCAGAGATGCTTGTATATTTGCTCTACAGCTTATTTATGTATCTAAATGTTTTGCATTAATCCATATtgtattgctgtttttttcctctaataATCATATCTTTAATACAAACctcattttttttacctcaaGGCACCATATTTAAATGAGATTGGACTCTTctgcaaattttttttccatcggACTTGGTGTTTCATGAAGGAAATTCTGTAGTCTCCCTTTTCTATCCACATccatatgaatatatattatactcataaaatgttaccaagaaaataataataatgaatattattgTATGCTGATTTAGGTTTGTggcattaatttaatttgaataaaataccAAATTTCTAATTTGATATCTCCACGCATATCAGTGCGATATCTAAGATTGTAGCTCATAAAGAAAGCTGATGTATAGTAAAGATTGGGATGCTTGTATGATCGTTATGAAGGACCGGGCATTGGCATTTTTCCTTGACAAACTGCATTGTGTATGTCGAAGTAAACACAGCACATTGACAATGTTTATTGTTTTGGACGACCTGAAAAATAATGCTTTGTAGATGCTCTAGCGTTTtgtgaaatgttaaaatgaatgttCTGAGAAGCCAGACAAAGCAGGCTCCagtgaataaaaacaacatttaaacaca

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0001570 vasculogenesis biological_process
GO:0060840 artery development biological_process

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344857 lncRNA upstream 71154 6981963 ~ 6982804 (+) True G291096
TU344819 lncRNA upstream 114339 6939191 ~ 6939619 (+) True G291058
XR_004580109.1 lncRNA upstream 120098 6930369 ~ 6933860 (+) False LOC117599731
TU344873 lncRNA downstream 756 7058383 ~ 7058583 (+) True G291109
TU345070 lncRNA downstream 162679 7220306 ~ 7227227 (+) True G291274
TU345097 lncRNA downstream 203423 7261050 ~ 7262111 (+) True G291300
TU345188 lncRNA downstream 346801 7404428 ~ 7405105 (+) True G291380
TU345235 lncRNA downstream 431681 7489308 ~ 7520858 (+) True G291423
XM_026944650.2 mRNA upstream 4625 7024007 ~ 7049333 (+) True pinx1
XM_026944691.2 mRNA upstream 34272 7012742 ~ 7019686 (+) True tdh
XM_026944554.2 mRNA upstream 50328 6987109 ~ 7003630 (+) True mtmr9
XM_026944570.2 mRNA downstream 38514 7096141 ~ 7106016 (+) True blk
XM_026944569.2 mRNA downstream 38514 7096141 ~ 7106016 (+) False blk
XM_026944600.2 mRNA downstream 61064 7118691 ~ 7147134 (+) True fndc4a
XM_034313491.1 mRNA downstream 61064 7118691 ~ 7147134 (+) False fndc4a
XM_034313492.1 mRNA downstream 61689 7119316 ~ 7147134 (+) False fndc4a
XR_004580167.1 other upstream 34272 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 1252265 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2074558 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 2075103 4941951 ~ 4978855 (+) False dnm3a
trnac-gca_25 other downstream 531741 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 825591 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 827018 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 829901 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 830382 7888009 ~ 7888080 (+) True trnaa-ugc_18

Expression Profile