RNA id: XM_026944335.2


Basic Information

Item Value
RNA id XM_026944335.2
length 2066
RNA type mRNA
GC content 0.38
exon number 7
gene id atraid
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7246172 ~ 7249822 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGAGATACAACATGTCATGTGACCTGAGTTGGGGGAAAATGACAGCTGGGGTCGGCATTTTTACCTTTtctactttatatttatttagctttttatttattttatgcagtGTGTACGTCGACTGTGAGCCCACTGATGTTCAGTTATGCCACATGTGTAAGGGAGTCGTACAGAACCACAGCGCTGTGTGGAGCTTCTGCCTATCAGAAGGCAGGATTGAGGGTCGGTGCTGTGTTCAGGATGAAGAGGAGAACATTCTGGGGCTGGATCTATCTAATTGTTCTCTGAGTCAAGTGGAGGGCCTCCATGTAGCTTCTGCAGCAGTTATcatagacCTCTCAAGCAACCCTATTTCCAATATGAGTGATTTTATATTTCAAGGTTTTAATCGTCTCAGCCATCTTATACTGCCCATAAAACTGGATTGTCCTGGTGGCAACATATCATGGGACAGAGTGGATATTAAACATGATACCCGGCTCTGTGAAGGACAGAGGAATGCCTGCAATCAAACTGGGCAAATGTCCTTGGATTGCCCTGAGAACTCTAACTGCATGCCTTATGGACCAGGATTCTCTCAGTGCAGCTGTGCCCACAACTTCCATGGATACAAGTGCCTAAGACAGGGCCGTTTTCCTATGCTGGAAGTCATGGCAATATTAGGTGGGTCCACAGTTGTGGTTTCAATGTTACTATGGATCACTCAAAGGCGAAAAATAAAAGGCACCTGAGTTCTTGCGTCATCTGGCAGCTGGTAGAAAGCGGTAGGAAACACTGAACAAAGCATGTTGTGTCGAAGTGATACAATGTCTGAAtagagaaatgcttttttttatttttgtgtgtttaagatTGATCTGTTTTCAACAAAAAACTCGGACTTTGCTCTAAGCACATGATCAGGTTGGGAAGGTCAATAATGCATCTTTTAGATGGTGCTCATTGCCTCAGAGTTGCCCGTCCTCAAAGAATAACTGTCACTTTAATAAACTGCATGATTATACAGGTATGCATAACACTGGGAGTTTGGATTGCAGGTATATACTCTGGCATGTAGTAAATAGTGGCCAAGGATTTTAAGTCAAAAATGACTAGACTTCATTTGAGGCATTATTTCTACTGAATAGTGCAAATTAACAGCCATTGATGACCAGAGTTGCAAATTGCAAGAATGGTATAATGTACACATGGCAAGTGGTGTGTGAAGTCCAGAGACTGTCTCCTTCATTTGTCTTTTCAACCAATTGTCTACTTTGTccaaaatatatacagaataaatacTCAAAAGTGTACCGTGCCCCTAAATTTACACTTCTGGTTGCCAGTGACTGTTAATGTGACCGTACGTTTTTGTCATCACTCTAAATCATATACAGTACTTTAGAGATGGGCATTGATAAAGTCTTTTGGATGAGGGACAAAATCTTTAGGATTATAACATGTCCTGTCAGCTAAACGTAATGCTACTAGACCTGGATGACTGAAAACGGTTGGGCATTTTTGCATACATTTTATCTCATTTGTTGTGGttattgtttgttaaatatatatgcatacatttttacTCTGTACACATTCTTGCAccaaaataatgattttgttattgttataatatgttcacattgtttttaatcaccttaaaatatgcattaaaatGTCCAAGAGCCTCGAAAAGACAGAAGTGCTAAAACCTACAATGTTATTTGTGAATATCAGTaaccacatttttaaatccagtaaATTGTGTTGTATGCAACTGGCATTATGTGTGTCCTCACAAGTAATAGCTGTGTTACTATCAAGATATGGAATGTACAAAGGCCAATGCTATGTTAAAAATAACTGCTGTAAGAAATTACAAAACTAACATTCACGTCTTTACTTTCTTCCAGcctgcataaataaatgcagtcaAATTTGTAAGAAGCCCTGTATCACGTATGCAGCTTAATAATCAAAAGGGTTTACTAACAAAATTGAATTCTTTTCCagaaaacacaattaaaaagaCATACATAATttcaaatatatgtaaatgattttaaataaatttactgaAGTCCA

Function

GO:

id name namespace
GO:0033689 negative regulation of osteoblast proliferation biological_process
GO:0030501 positive regulation of bone mineralization biological_process
GO:0010468 regulation of gene expression biological_process
GO:0045669 positive regulation of osteoblast differentiation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345070 lncRNA upstream 18945 7220306 ~ 7227227 (+) True G291274
TU344873 lncRNA upstream 187589 7058383 ~ 7058583 (+) True G291109
TU344857 lncRNA upstream 263368 6981963 ~ 6982804 (+) True G291096
TU344819 lncRNA upstream 306553 6939191 ~ 6939619 (+) True G291058
XR_004580108.1 lncRNA upstream 312312 6930375 ~ 6933860 (+) False LOC117599731
TU345097 lncRNA downstream 11228 7261050 ~ 7262111 (+) True G291300
TU345188 lncRNA downstream 154606 7404428 ~ 7405105 (+) True G291380
TU345235 lncRNA downstream 239486 7489308 ~ 7520858 (+) True G291423
TU345246 lncRNA downstream 272102 7521924 ~ 7522123 (+) True G291434
XR_003404600.2 lncRNA downstream 360665 7610487 ~ 7614980 (+) True LOC113545343
XM_026944342.2 mRNA upstream 26516 7208687 ~ 7219656 (+) True znf513a
XM_026944600.2 mRNA upstream 99038 7118691 ~ 7147134 (+) True fndc4a
XM_034313491.1 mRNA upstream 99038 7118691 ~ 7147134 (+) False fndc4a
XM_034313492.1 mRNA upstream 99038 7119316 ~ 7147134 (+) False fndc4a
XM_026944570.2 mRNA upstream 140156 7096141 ~ 7106016 (+) True blk
XM_034313432.1 mRNA downstream 14104 7263926 ~ 7276146 (+) False nme6
XM_034313431.1 mRNA downstream 17584 7267406 ~ 7276146 (+) True nme6
XM_026944356.2 mRNA downstream 17584 7267406 ~ 7276146 (+) False nme6
XM_026944605.2 mRNA downstream 89257 7339079 ~ 7344915 (+) True si:ch211-142k18.1
XM_026944424.2 mRNA downstream 98333 7348155 ~ 7356914 (+) True chrna2b
XR_004580167.1 other upstream 226486 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 1444479 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2266772 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 2267317 4941951 ~ 4978855 (+) False dnm3a
trnac-gca_25 other downstream 339546 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 633396 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 634823 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 637706 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 638187 7888009 ~ 7888080 (+) True trnaa-ugc_18

Expression Profile