RNA id: XM_026944338.2


Basic Information

Item Value
RNA id XM_026944338.2
length 4114
RNA type mRNA
GC content 0.43
exon number 5
gene id rhoj
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7478282 ~ 7502438 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTAGAGCAGAGAAGTTGAGGATTTCCACCTTTAAAAGGCATTAGAGAAGACTGTGCGCTTTCCTCCAGTGAATAAACGAGTGGGACTGCACTGGGATTTGGCTGTTTGCCTGCAGTAGTTAAGTTTTAGTTAGCTTACTGGAACTGCAGGACCTGGACTATGTCCCCTCCTTCTGTTTGTCGCTGCTGTATTTCTGCCTAGTCTCCCTCGTTAAGTGGATTTGGACAGAGCCCCTATTGTTCCCAGCCCACTCCTGCCTAATATGGCATTCTCGAGGAAAGCCCCAGTTTCCTGAAACGAGCGACGAGAAGCCGGCGAATGGCGAAGGCTGCTCTAGAGAATGAcggagaaaatgtgaaaaatcagGACGCTTGCCGAAAGCGGTTCAGTGTTTTCAGAGTTTCGGACGCGGACACTGTGCAATGACGGGATGAAAGCTGGAGGACTGAGTGTAAATGCAGGCGCCGGTGTGTTTTGGAAGCGCGAGGGCAAACAGTGCGGCTCACCGACCTGACGGATTAGAGGCGTGAGTAGTCATCCTGAGGGTTTGGACTGGTTTAACTAAGGCCCTCGGCGTCTTGTTACAAACACAGAAGGACAGGGATTAGAGTGTTCCGTGTGCTATAAGGGAACAGAGAGGCAGGACAGCAGCAGTAGACTATCATGCCTGGCCGTAGTTCCAGAAGTAAGCAGCGTGCCGGGGCTGAGGACGCAGGGGAGAGTGGAGAGACCTTCACTACTTCTGTTAAAAAGATGCTGAAATGTGTGGTGGTCGGAGACGGAGCCGTTGGCAAGACCTGCTTACTCATGAGCTACGCCAATGACGCTTTTCCTGAGGAATATGTACCGACTGTGTTCGACCATTACGCAGtaaatgttacAGTATCTGGCAGACAGCACTTGTTGGGGTTGTACGACACAGCTGGGCAGGAAGACTACAACCAGCTGCGGCCCCTTTCCTACCCCAACACTGACGTGTTCCTCATCTGCTTCTCTGTGGTGAACCCGGCCTCATATTACAACGTGCAGGAGGAGTGGGTTCCCGAGCTCAAGTCTTGCATGCCTCATGTGCCATACATCCTCATAGGCACACAGATTGACTTGCGAGACGATCCAAAGACACTGGCCCGTTTGCTCCAAATGAAGGAGAAACCACTGACATATGAGCAAGGGCTCAAGCTGGCCAGAGAGATTGGTGCACAGTGCTACCTCGAGTGTTCAGCCCTGACCCAGAAGGGACTAAAGACAGTGTTTGACGAGGCCATCCTGACAATCTTCAGCCCTAAGAAACAGAAGAGGTGCTGTATATCATGCAGGAGCTGCTGTACTATTGCATGATCAAAGCGCCATGAGGCATATCACCCAGTGAACATCAGCAAACATCCTGAAATCAGTCTATATAAGGCAGGAATGAGACACAGCCAAGTTCCTTCAGTACCTGAAGGAGGAAATGAGACACAGCCAAAGGTTTTCAGGACCTCCTGCTCAATGTGTATTCTGCATCACTACTActgtcatgaaaaaaaagaaaaatcacacttCAGTTccttattaataattttctgcCCTCCAAGGTTTGAGCCTTTTCAGCCGTTTTCTCATATGTTCTGTAGAGTACATTTCCTGGACTCGCACAGACGTTGACACTAAAAAACAAGACATGCTACACTGAATTGGAGTGGATCTGAATGAAAGCAATGTGTATACCTGCTCTGCTTATATTTAACTCCTAAGatacagactgtgtgataaaTGAGTTTCCTTTTGGGATTTGGAAACTCAAAACTCTCTATATAGATGATTATATGGTCTTTGCTCGTTACAAGTGCCTCGATCAACCGCCAGTCATTCTGTTTGTGCTCATGCCAAAGTCTGCTTTCTCACCTTAAGCTTTAGACAGGGATACAGGTCTCTGAATTGCCACAGGATGACTTCCCCAATTACCAGTATAAAAAAAGTCTTGTTTTCCAGCCATGGGCTATTTTAAGTTTCATACATTATAGGCTTTTCAAAGGCCTGTGAAACAAATGTTGAAAATCCATTCCTCCGTAAAGGGTGATTTTCTTGCTTTTGCCTCAGATCAATAACATGCTCTTTTTTGCAGCCATGGTCTGAGATAGTTAATAAGGGAAATTCTCAAAGGCTGGACAAATCATCAATAAGGGGAGCAGATACAGACAGGGAATAGTAGAAATGGGGAAACCCAACACAATTTAGTTTCCAAGAGGGCCATTTAAAATGAGTGTTTCAAACAACACTTAACCCCAACAGTGCTACGCAGTAAATTGCTCATCCTCCTAAAACACAGTCATGCAGGTTAAATGTTCTCATACCCAAGTATCTCTCTAAGTTTCCAGGAGAGAATCTTTTCCAAAACTATCCAGAATTTCAGtagcagaggtgccaacatctacATCCAACATCTACCATGGAAGCACAGGAGCCACCTGAAAACtaggcttttttccccccattttctccctaattccCACCTACGGAGGACActttggctagtgtcactgtgattgacacgGGACAGACAGTAATGcccatccttcccacccagaaACCACAGCAAATTTTTTGTTCTCTTGGCTCCTGTCTATGGATAGCTgaggcatcatcaggatttgaactcattttctgacctgtgaattcataAGCCTCTGTCAAGAAGATGGGACTGTGGTATCTGACTGCTTAAAAAAACATAGGAGgtgcttattattaagtagtgGATACCCAGATTTTTGCCTCgctgttttcttggcacacatctttaaaaaaaaattagctgcCTCATCCACTGACAGGgcttttttttgataaaattcAATTGCTTCTCTCTGCCTGCTTGGATTTTCTTGTTGGCACTTTTGCAATAGTGGTGCTATGAAAATCCTCAGGGCGTGAAGCAGATGCTTTTAGTGTCTGTACTTTACAACTGTACATATATCAACACAACAAAGACACAAGATTTTACCAAAAGTCAAGCCTCTATTGTTATCTCCTACAGCAATCATATACTGTTTTATTGCTCCCTTCTGCCAAATCCACCTCCTCATTTGACCTGATTTAAGAACAACCTAAACACATAAAGCTTTGTCTTCATTCCTCATCCTTTTCCAAAGGTCTTTTGGAGCAGCCAGGGGTCTAGATCCTTTCCAGCAAGAGCTTTAGTGTGTTCCgtcttaataaaatataatcatggCCATGAACCATTAAAAAATGGAACAGTGCAGAAGTTTAGACACATTCTCACATTCACTTGTAGCTTTCCAGTGTCTGAAAtgacaccaaacacacacatctgtactCAGTGCTGTTTAAATGCACACCTGCACTGGCACTAAACACTGGTTGCTGTTATGTGGCACCTCAGGGACGATTTCTGGAGCGAGCCACCTCCTCGTGAAGATGAGGAGAACGGCCCCTTACACACAGGAAGAATGAGCCTGAATCCACGTGCCTTCCATGTAGCACAGAGTtagtttattttcttcttttcagacACTGTGCCTTACATCATCCTATGCAACAAATTGTATACTGTAATCATACACAGAAGACCAGCATTAGCCCTGGCCACATCAACTATAACTTGAACTGTGTACttgtatcctttttttttatttagaatgtGGTgagaattacatttttttgtatatgtaaatgtattggTTTGTACATCATACATAAAGACAGCAGTTTTATTTACTAAATCGGTATATCTAATAAACCGGCAACTTGGTGTATGACTGCTTTTCttctcaaatatatatttatagcttGTCCATATCAGCTGTGATTAAAACTTGTGAACAAACTGAATTGTCTAGCTTTGTTTAAGATGccatttacaaaattattttcagCAGATTACACAGTGCCATGCTGATAGTATATAATAGTAAAATGCTATGACAATTTGTACATCATCCATAAGACACAAAGACTTGTAATCCCGCACAGAAGTTTATCACTGTTGCAATGTAGATATAGTTGTACTGTACCAAGGAGCTGTAAATGTTCAGTTTAGGTTCCACGATAGGggtgccatttagcccttgtCAAATGAAACCATTAAAACATGTTAACCCATCTCTGgaaaaa

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07864 RHOJ, TCL; Ras homolog gene family, member J

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345188 lncRNA upstream 73177 7404428 ~ 7405105 (+) True G291380
TU345097 lncRNA upstream 216171 7261050 ~ 7262111 (+) True G291300
TU345070 lncRNA upstream 251055 7220306 ~ 7227227 (+) True G291274
TU344873 lncRNA upstream 419699 7058383 ~ 7058583 (+) True G291109
TU344857 lncRNA upstream 495478 6981963 ~ 6982804 (+) True G291096
TU345246 lncRNA downstream 19486 7521924 ~ 7522123 (+) True G291434
XR_003404600.2 lncRNA downstream 108049 7610487 ~ 7614980 (+) True LOC113545343
TU345443 lncRNA downstream 162691 7665129 ~ 7666009 (+) True G291581
TU345444 lncRNA downstream 164481 7666919 ~ 7667805 (+) True G291582
TU345535 lncRNA downstream 275191 7777629 ~ 7782008 (+) False atp5mpl
XM_026944424.2 mRNA upstream 121368 7348155 ~ 7356914 (+) True chrna2b
XM_026944605.2 mRNA upstream 133367 7339079 ~ 7344915 (+) True si:ch211-142k18.1
XM_034313432.1 mRNA upstream 202136 7263926 ~ 7276146 (+) False nme6
XM_034313431.1 mRNA upstream 202136 7267406 ~ 7276146 (+) True nme6
XM_026944356.2 mRNA upstream 202136 7267406 ~ 7276146 (+) False nme6
XM_026944346.2 mRNA downstream 120783 7623221 ~ 7629922 (+) False six4b
XM_026944345.2 mRNA downstream 120784 7623222 ~ 7629922 (+) True six4b
XM_026944579.2 mRNA downstream 133747 7636185 ~ 7639104 (+) True six1b
XM_026944474.2 mRNA downstream 221868 7724306 ~ 7767694 (+) True rtn1b
XM_026944475.2 mRNA downstream 254458 7756896 ~ 7766704 (+) False rtn1b
XR_004580167.1 other upstream 458596 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 1676589 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2498882 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 2499427 4941951 ~ 4978855 (+) False dnm3a
trnac-gca_25 other downstream 86930 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 380780 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 382207 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 385090 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 385571 7888009 ~ 7888080 (+) True trnaa-ugc_18

Expression Profile