RNA id: XM_026944340.1


Basic Information

Item Value
RNA id XM_026944340.1
length 936
RNA type mRNA
GC content 0.53
exon number 6
gene id plpp3
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5542956 ~ 5575570 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCAGTCGTACATGTACGAGAAAGCGATGGCACCCGAGACGAGAAACGGCGGCACCGCGACATTCAGCAGCAACGGCACCGGCACAGGCAGGAGGAAGCTGCTGATAGTCCTGGATATCATCTGCCTTCTTTTAGTCATGCTGCCCTCCATGGTGCTGCACAAGTCTTCAATACAGCCGTACCAGCGCGGCTTCTACTGCACAGACGACAGCATCCGCTACGACTATAAGAACAGCACTGTGCCCTCTTCCGTGCTGATGGCTGTGGGCGTCCTCCTGCCCCTCGCCAGTATTGTGATTGGCGAGTGCTATAGGATCCGTTACCTGAAGCAGGGCTCACACTCGTTTGTGGGAAACCCGTACGTCTCTGCCCTTTACCGGCAGGTAGGCGTGTTCATCTTCGGCTGCGCAATCAGCCAGTCATTCACAGACATCGCCAAGGTGTCTGTGGGGCGCATGAGGCCACACTTTCTTGAAGTGTGCAAGCTGGACTACTCACAAATCAACTGCTCTGATGGCTATATCACTGACTATGTGTGCTTGGGCGACCCCAGCAAGGTGCAGGAGGCGAGgAAATCCTTCTTCTCTGGACATGCCTCATTTTCAATGTACACCATGCTGTATCTAGCTTTCTACCTGCAGTCTCGGTTTACTTGGCGTGGAGCTCGTCTCCTGAGACCGCTGGTCCAGTTCACCCTTCTGATGATGGCCTTTTACACCGGACTGTCTCGTGTTTCAGACCATAAGCACCATCCCACTGACGTGCTTGCTGGCTTTGTACAAGGAGCACTGGTGGCCTACTGCATAGTCTTCTATGTGTCAGACCTGTTTAAGCCCAAAGTCAAGACCGTCAGTCCTCCACCATCACCAATCAAGAAAGAACTCCTGCCCTCCGCTGACATCATAGACAGGAACAACCATCACAACATGGTGTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404604.2 lncRNA upstream 236054 5302630 ~ 5306902 (+) True LOC113545370
TU343799 lncRNA upstream 289233 5253517 ~ 5253723 (+) True G290192
XR_004580165.1 lncRNA upstream 392031 5147185 ~ 5150925 (+) True LOC117599804
TU343587 lncRNA upstream 635144 4898967 ~ 4907812 (+) False G290030
TU343586 lncRNA upstream 642608 4898967 ~ 4900348 (+) True G290030
XR_004580164.1 lncRNA downstream 4838 5579818 ~ 5588495 (+) True LOC117599803
TU344031 lncRNA downstream 72397 5647377 ~ 5655687 (+) True G290419
TU344180 lncRNA downstream 157751 5732731 ~ 5734300 (+) True G290562
TU344187 lncRNA downstream 226818 5801798 ~ 5804340 (+) True G290566
TU344188 lncRNA downstream 229696 5804676 ~ 5805588 (+) True G290567
XM_034313904.1 mRNA upstream 22323 5505839 ~ 5520633 (+) True LOC113545193
XM_026944642.2 mRNA upstream 40552 5342327 ~ 5502404 (+) False dab1a
XM_026944585.2 mRNA downstream 160494 5735474 ~ 5801693 (+) False usp24
XM_026944586.2 mRNA downstream 160494 5735474 ~ 5801693 (+) False usp24
XM_034313451.1 mRNA downstream 269053 5844033 ~ 5856556 (+) False dhcr24
XM_026944360.2 mRNA downstream 269053 5844033 ~ 5856556 (+) True dhcr24
XM_026944357.2 mRNA downstream 269054 5844034 ~ 5856556 (+) False dhcr24
XR_004580098.1 other upstream 563556 4941951 ~ 4979400 (+) False dnm3a
XR_004580099.1 other upstream 563556 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 564101 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other upstream 568895 4941951 ~ 4974061 (+) False dnm3a
trnad-guc_22 other upstream 1193077 4349808 ~ 4349879 (+) True trnad-guc_22
XR_004580141.1 other downstream 160493 5735473 ~ 5801693 (+) True usp24
XR_004580167.1 other downstream 1437762 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 2014388 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 2308238 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 2309665 7884645 ~ 7884716 (+) True trnaa-cgc_6

Expression Profile