RNA id: XM_026944346.2


Basic Information

Item Value
RNA id XM_026944346.2
length 2820
RNA type mRNA
GC content 0.52
exon number 3
gene id six4b
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7623221 ~ 7629922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGAGGCGGCCAATCGGCGGCCGTGCGACTGTTCGGACCCCCTTTCCCATACGGACTGCAGAGTTAAACTCTCGCTGGAGCTCTGAAACTAAGATCTTTATTCTCTCTGCGCGGCGACCGGACACCTGATCGCGCTCGGATGGAGGGGTGAAACCCGATCTTCCGAATGTACTGCTGCCCACGAAACCCGGAGGAGTGACTCACCATCAAGGAcacgtgaaaaaaaaacatgtcttcTTCCTCGAGTGAGGTGATTGGCGCCGATGAGATCAAGAGGGAGAGCTCGAGGGCACTGGAGACTCGGGGGAGTGTCAAGCTGGCCGCGCTCGATCCGGCCGGGTTGCCCATGGAGAACTCTGGCTCGGCGGCGGTGGCAGTTGAATGCGCACCGGCCTCTCTCGCGTTCTCACCGGAACAagtggcgtgtgtgtgcgaGGCACTGCTGCAGGGCGGCAATGTGGAGCGCCTGGCCCGCTTCTTATGGTCGCTACCGCAGAGTGAGCTGCTGCGCGGCAACGAGAGCATCCTTAAGGCGCAGGCCATAGTCGCGTTCCATCAGGCGCGCTACCAGGAGCTCTACTGCATCTTAGAGAACCACAACTTCAGCCCGTGCAACCACTCGTCCCTGCAGGACATGTGGTACAAGGCGCGCTACACCGAGGCGGAGAAGGCACGCGGCAGGCCGCTGGGCGCCGTGGACAAATACCGACTGCGCAGGAAGTATCCGCTGCCGCGCACCATCTGGGACGGCGAAGAGACCGTGTACTGCTTCAAGGAGAGGTCGAGGAACGCGCTCAAGGACATGTACAAGCGCAACCGTTACCCGTCGCCGGCGGAGAAGCGGAACCTCGCCAAAATCACTGGACTTTCTTTGACGCAGGTCAGCAACTGGTTCAAAAACAGGAGACAGCGGGACCGGAACCCATCAGAAGCGCAGTCCAAAAGTGAATCAGATGGCAATCATAGCACAGAAGATGAGTCAAGTAAGGGACAGGAAGAGCTTTCTCCTCGTCCTCTCTCTAGCGGCTCTGCTGGTTCAGTTGCCCTTGGCACTAGCCCTGCTGTAGCATACTCCGATGGTGCCACCACTGTCATCCAGCAGATCGGGGATGCCAAAATGTCTCCACTTGCCGCAGGAATGGGTTTCAATGGCGACCTGACAAACACCAACTCCCACTATCTTAATGGTGGAGCATATGTtcaatcacatggcagcaacAGTCTCCTGAATGGACTTGGAACCACAAGTGGTCACTTCTTGACCTTCGATCCCCAGAGGGTCTCCCATGCCCAAGAGAGGCTACTGGGTGGCTCCTCTGTGTCTTATGCCTCTTATTCAATGGGGGCTCCAGAAACCACAGTTGGAAAACTAGAGGGTATGCAGCCTCTGGCGTCACATTCAGAACATGGAGCAGTGCCTTCAGTCGTCACCTTTGCCACCacgtcctcttcctcctctccctctggAGCTCCTCATCTCAGCAGCTACAGCATGGTCAACCTTCCTGGGGTTGAGAACAACCTGGGTCTTCCGCCTTTACTGCTACCGCCATCTTCTACAGCACCCTCTCACGGCTCAGCTCCACTGGACGGGGTGGTCAGCAACTCGTCCCAGCACTCAGGCCAACCCCTGCTCTACACGCTCAACCAGGCTGTCAAGCAGGAGCCTTTGGACATTGGGGTGGCCTACACATATCCCTCCAGTGTTCCCCTAGACCAAAGCAGCAACTTGGGCTACACGgcatccctctttctctccaccAACCTCAGCCACTCACCCAACAACGGAGGCCCCCTGGCCCCTGCAGCCACAGCTGCTATCACCTCTGTGCTCTCCAGCACAGAGGGTCACTCCGGTCTGACTCACAATGCCCGCGGCCTCCAGGAAACTGGGGGAGCTCTGCCCTCAGACTACAGGGCACAGGAAGCACAGCTGCCCCTGTCTGACAATCTTGAGACCCCTGCAGGTACTGGTGAGGGCCCTCCTGGAGTGTGTGGTGATCTGGACATGGAGGGAAAAGAGCTGGCCAAGCTGCAGACTGTTCAGATGGACGAGGACAGcagtgacctctgacccctgtAATCACAACAACTGAAGAGCTGTATTTCATTAGCTGTTGATTTTCTTGCACTGCAGCATAACTATAAAAGTCTCCTAAGCACACATCAATCTTTTTATACTTTGTCGCTTTTACGATAATGTATGCAAGATGTGTGCAAATAGGTGGAACACATGAACAGTGCCTTTGTATCCCTAAATAAATGTAGCCTCATGTCCTGACTTGCACTCGGATGGCTGCAGAATGTACTTGTTGATGCACTGACCCTGAACAAGATGTCTCAGGCCTGTCTTTTCTCTCCTATTTGCAGTAATGGAGATTTTAattcagagagagatggagagtgaTAGAGCATGgtggactgagagagagaaagagagagagagagagagaaagagagtataAAATAGCAGATGTGTTTGGTGAGTCTTGCAAATGTTTCTGCACTATCATTGCAGCTTCATACTGATTCTTTATTTTACTCTCCAAAATTTTATCGAAGCAcagatgtttaattttttgttgaCGTTtggtttttgtatttaattttttgaagCTTGAAATGGCAATGTGAACAAcgtttttgttatattttgctttttaagcAATTTAAGTTCAGCAAGGACTTAACCACAGGTGAGAAATCTTTGTCCTTGATATGAGAATACTGTATTATTGGGCATTCAGCAACTGGTCTCATGTACCTTCcttaaagaaatgaaatcttTACAGTAGTAAATGGTTTCAGTTGTAAGAAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404600.2 lncRNA upstream 8241 7610487 ~ 7614980 (+) True LOC113545343
TU345246 lncRNA upstream 101098 7521924 ~ 7522123 (+) True G291434
TU345235 lncRNA upstream 102363 7489308 ~ 7520858 (+) True G291423
TU345188 lncRNA upstream 218116 7404428 ~ 7405105 (+) True G291380
TU345097 lncRNA upstream 361110 7261050 ~ 7262111 (+) True G291300
TU345443 lncRNA downstream 35207 7665129 ~ 7666009 (+) True G291581
TU345444 lncRNA downstream 36997 7666919 ~ 7667805 (+) True G291582
TU345535 lncRNA downstream 147707 7777629 ~ 7782008 (+) False atp5mpl
TU345543 lncRNA downstream 203408 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA downstream 203408 7833330 ~ 7837080 (+) True G291644
XM_026944338.2 mRNA upstream 120783 7478282 ~ 7502438 (+) True rhoj
XM_026944424.2 mRNA upstream 266307 7348155 ~ 7356914 (+) True chrna2b
XM_026944605.2 mRNA upstream 278306 7339079 ~ 7344915 (+) True si:ch211-142k18.1
XM_034313432.1 mRNA upstream 347075 7263926 ~ 7276146 (+) False nme6
XM_026944579.2 mRNA downstream 6263 7636185 ~ 7639104 (+) True six1b
XM_026944474.2 mRNA downstream 94384 7724306 ~ 7767694 (+) True rtn1b
XM_026944475.2 mRNA downstream 126974 7756896 ~ 7766704 (+) False rtn1b
XM_026944647.2 mRNA downstream 144570 7774492 ~ 7776361 (+) True rd3l
XM_026944390.2 mRNA downstream 147675 7777597 ~ 7781997 (+) True atp5mpl
trnac-gca_25 other upstream 33782 7589368 ~ 7589439 (+) True trnac-gca_25
XR_004580167.1 other upstream 603535 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 1821528 5735473 ~ 5801693 (+) True usp24
XR_004580099.1 other upstream 2643821 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 2644366 4941951 ~ 4978855 (+) False dnm3a
trnaa-cgc_5 other downstream 253296 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 254723 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 257606 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 258087 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-cgc_7 other downstream 258843 7888765 ~ 7888836 (+) True trnaa-cgc_7

Expression Profile