RNA id: XM_026944353.2


Basic Information

Item Value
RNA id XM_026944353.2
length 3405
RNA type mRNA
GC content 0.47
exon number 8
gene id mettl13
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4932489 ~ 4939511 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGTCCGTCAAGGAAATGTGTCCGGGTTGAAACTCCAAAACATGTGGGAAACGACATTAGAAAATTAGAATacgaagaaataaataaaatgcaggaAATATTATAGTTCAGGGCATAAGTGGTTGTAGTAGCTTATGTCTTGCATGTTGAAGGCTGCTGGTgatcagcatttaaaaaaagagtcgAGAAAGAGATTTTTAATCCAGCACCGTTTTAAAAGAAGGACATGAGTCTGTTACCCAGAACAGCCGAGGAGTTCAGCTCTGCAGATTACTGGGAACGATTTTTCCGCAAAAGGGGAGAGAAAGCTTTTGAGTGGTATGGAGACTACAACTCGCTGTGTGGCGTGCTGCACAAATACATTAAACCCCGTGAGAAGGTTTTAGTGGTGGGCTGTGGGAACTCGGAGCTAAGTGAACAGCTTTACGATGTCGGCTACCGCCACTTAACCAACATCGATATCAGCGAGACAGTTGTTGCTCACATGAACCAGCGAAACGTGCAGCGCCGTCCCGACCTCACCTTCCATCAGGTAGATGCCACTCAGACAGGTTATGACAGCGGAAGCTTCCAGGCTGCTCTGGACAAGGGAACTCTAGATGCCATGGCCTCGGAGGAGGAGGGCGTCGTGGCGAGCAAAATGCTGGCTGAGGTGGGAAGAGTTCTGGCTGTGGGCGGCCGCTACGTCTGTGTGACTCTCGCCCAGGAGCATGTGATAAAGCTGGCAGTGGAGCATTTTGCTGAAGCTGGCTTTGCCATACGTATCCACTGCCTGAGCCAGCAGAACCCGGACTTGGATTCCTCCTCATTTGCTCTTCCTGTATTCATCCTCGTCTGCACCAAGTTCCGCCAGCCACCTCCATTCAAAGTGCTGGAGATGTGCCAGGGGGAGGACGGTGCCCCGTGTAGACTGGTGTCGGTTCCTGAGCTATTAGCCGCAGTAAAGGAACGGCAGGCGTATGCACTCATGCTCCAGAAGCTGAGGGGTGCCACAGACACTGCTAGCACACCCTCCCTCACACTGTGCCACGCAGCCACGGGCCGTCCCCGATACACACTCACGGTGCAGGACAGTCCACCTTCTGCCAAAGTACCTCGTACCAACCACTTTGCTATCTTTATTGTTCCTCAGGGTCGAGAATCCGATTGGTTGTACGGTTCTGCCGAGGGTCGCGCTCAGCTAGCCGCCAGCGCAAACTTCCGCCGATTGATCATTGTTGCAATGCATCGAGACCAGGAATATAAAGACATGCAAGCAGTCCAGTCTGAGCTCTCTCCCATGGTGATGGAGCTGGCTCCTCCTGGAATGCCAGCCAATCAGCAGGTGCCGTTCTTGTCTGTAGGAGGTGACCTGGGCTGGAGAGAGGTGGTGGGCCGAGGCATCAGTGACCTAACAGGCGAGTATTCTGTTGAAGATGTCCGAGGAGAGGATGGTCATGTCTACCGTAGATTAATCTTCATGAACAACACTCAGCTGGTGCAGTCCGAAAGCCGCCTGAGATCCACAGCTACAACTGGTTCTGCTCAGAAAAAGAAGAGCAAGAAGAAGTCAAAACCCCCTGCTGCTGAAACTCCAGCTTCAGCTAACAAAAATCACATTGTAGACCGAGGATTTCTCTGTTGTACTCATCACGAGGTCATGATCGCAGGCTTTGCCATGCTAGGAAAGGAGGCCGTCAGTAATAAAGATGGCCAGGTATCAGTGTTAGTGGTGGGGCTGGGCGGTGGAGGCCTGCCCCAGTTCATACGGGACTTTGTGCCTGGTGTGCGGGTGGAGGTTGTGGAACTCGACCCGGCCGTACTGGAGGTAGCAAAGACCTGGTTTGGGTTCCAGACTGATGACAGACTGAAGGTAATCCTGGGAGATGGTCTAGAATACATCAGCATGCTAGAGAGCAAGgGGGGACATTCCTATGATGTCATCATGTTCGATGTTGACAGCAAGGACCGCTCCCTGGGCATGAGCTGCCCTCCTCCTGCTTTTGTAGAAACATCCCTATTGGAGAAAGTCTGCAAGTTGTTAACTCCTCGAGGAGTGTTTATGTTAAACTTGGTGTGTCGTGACTCAGCTCTGAGGCAGTCAGTGTTGGAGCGTTTGCAGGCCGTGTTCCTGAGTGTGCTCTCTCGCCCTATTGAGGGTGAAGTGAACGAGGTGCTGCTGTGTTCCCGGGGTGGAAGTGAACGAGACAAACCAAACACCATCCCACAGGAGCTACAGCAGGCTGCCAAAACCCTCCAGGGGACGCTGCAGAGGCACAGTCAGAATGCTCCCTTTAACCCTCAGATAGACATTACTGCAATGCTGAAGGACCTGCGAGTAGCTtgaactgaaaactgaaatcaGCTTGCTTTAAAACCAAAAGCAGATGATTTTTGATTGTCAAAACTACATCATTATCAACAACCGtgattctttgttttgttttgtgcctGATTTTCTTCCATTCTTATAAGTGCAgtttgaaatgtttaatttaacataagacctataataatcatatatcaTCAAATATATCTTATAAAACTTATAAAATGTTGCAATGCATTGAACCTGGGTaatttcaggcttctgtttacatttttcttgtcCAGAAATGAGCTCTCTACCAGATAGAACATCTGCTCACCACCTAcccctttttctttaaaaggaaATTCATGAATCATTTGCTGTTTCGGAGTGGATGGGTCAGTTGGGAAGAAGGATTTTCATTGCAATTTTgatctaaacattttttttttactgtcaaaCTACACCTCAAGACTGTCATGATCATTAGACACGGTGTGATGATGGTAAAAACTAAGCTTTTATCTTTTTTGCTCATCTGGGAAGTAAACACAGGTCACATGGCTGACTACAGTACTACATTTACAGCaattagcagatgcccttatccagagcatcttacagaagtgctttgtacaACACTACAGCTGAAAAATGGCATCCAGCTGACCTAATGGGGAAAAAGTGGTGAGGGGCAGTAGTGGCTTAGCAGCTAGGGCTTTAGATTAAAATTCGAATGGttatgagtttgaatcctggaAGCCGTCTCTGTTGGGTCCTTGAACAAAGCCCTCATCTACTTAACTCAATTTTACATAgtttttggataaaagcatctgttaaatgagtaaatgtaaatgaaacgtGGTATAAAAAGTGGTATAATAACGCAAGTCTGGACTTTTACACAATCACATATAAAGTTTCTGTTTAAAGTACTCATTTCTATTGAGTTTAATATGAGGTAATGATAATTCTGTCAATTTTACATAAACCGGCATAAATAGAATGTAgtaccactttaataggaacacatgtacacctgctcatttaggcagttatctaatcaaccaatcatgtagcagcagcacaatgcataaaatcatgcaagta

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K25166 EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343587 lncRNA upstream 24677 4898967 ~ 4907812 (+) False G290030
TU343586 lncRNA upstream 32141 4898967 ~ 4900348 (+) True G290030
TU343583 lncRNA upstream 36102 4896122 ~ 4896387 (+) True G290028
TU343551 lncRNA upstream 117693 4808540 ~ 4814796 (+) False G290009
TU343552 lncRNA upstream 117693 4812169 ~ 4814796 (+) True G290009
XR_004580165.1 lncRNA downstream 207674 5147185 ~ 5150925 (+) True LOC117599804
TU343799 lncRNA downstream 314006 5253517 ~ 5253723 (+) True G290192
XR_003404604.2 lncRNA downstream 363119 5302630 ~ 5306902 (+) True LOC113545370
TU344029 lncRNA downstream 604607 5544118 ~ 5599007 (+) True G290417
XR_004580164.1 lncRNA downstream 640307 5579818 ~ 5588495 (+) True LOC117599803
XM_034313886.1 mRNA upstream 45988 4859323 ~ 4886501 (+) True prrc2c
XM_034313887.1 mRNA upstream 45988 4859323 ~ 4886501 (+) False prrc2c
XM_026944603.2 mRNA upstream 77764 4848284 ~ 4854725 (+) True LOC113545311
XM_034313918.1 mRNA upstream 78597 4847581 ~ 4853892 (+) False LOC113545311
XM_034313935.1 mRNA upstream 86455 4835086 ~ 4846034 (+) True LOC117599802
XM_034313596.1 mRNA downstream 2440 4941951 ~ 4979400 (+) False dnm3a
XM_034313593.1 mRNA downstream 2440 4941951 ~ 4979400 (+) False dnm3a
XM_034313598.1 mRNA downstream 2440 4941951 ~ 4979400 (+) False dnm3a
XM_034313595.1 mRNA downstream 2440 4941951 ~ 4979400 (+) False dnm3a
XM_034313594.1 mRNA downstream 2440 4941951 ~ 4979400 (+) False dnm3a
trnad-guc_22 other upstream 582610 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 594515 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 598860 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 603586 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 604947 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 2440 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 2440 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 2440 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 2441 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 795962 5735473 ~ 5801693 (+) True usp24

Expression Profile