RNA id: XM_034313792.1


Basic Information

Item Value
RNA id XM_034313792.1
length 1725
RNA type mRNA
GC content 0.41
exon number 4
gene id si:ch211-121a2.4
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5863591 ~ 5868013 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCAAAATGTATTTAGAACGCCAAGTTGCATGACCAAGGGAAGTTGCTAGCTAATGTTGGCTAGTTAGGACTACTGTGTAACTAGCAGAACAAGTTGTGTGCTAGCTCAGCAGTGTGTAATGACTACTAAACGCCTTGAAAGTCTGACATGTCACCTTCCTTTCCTTACTGATGTGTACAGGCTGTGTTGTTAGGCATGTGCAGACTTTAGTCAGAGTTTAGGATGTTCAGACTCAGATTACAGTTTGTAGACTTGTCATACAAACATAATATGAAGTTATGTAAGTTATCTGGCACGAAGACTTGAGCCAGTCACCGGGAAGGGGAACGGGATCAGAGGGTACAGCACATACGAGATTGGATGGTGTCCACTGATCATGACCACGGACCAGGAGCCGCCTGTCAGTGCAAAACTTTTTCACCTTATCTTCCTCTCCACCTTTTGGGGCATGCAGATATGGGTCACCTTCATCTCTGGATTTGTCATGGACAGCCATCTAAACAGACACACCTACGGCTTTATTCAGAGTCGACTCTTCCCTTTCTATCTGCACATCGGCTCGGCCTGTGCGTTCTTCAACCTCACTATTTTTGCCATGTACCATCCCAGTGACCTGCTGGATGATAAAGAGGCCTTTCAGatctttgttttctttgtgtgtgtgactgtggcAGCCGTGAATGCCCAGTGGTTTGGCCAGTTAACCTCCGAAATCATGGCGGACATGCACGTGATTGAGCAGGCTTGTGGGCTGGGCCAGGACATTGGGCTCTCATCCAACCGCGAAGCCTACTCCAAACTGTGCGACAAAGACCCCAAGTACAAGCAGCTGAGCAACCGTCTGTGGCTTTACCACCTCCTCTCATCTTTCTGTAACATCTGCTGTATTGTGTGCAACGGGTACAGCCTTTATTACCTGGCAGAGAACCTTAATACGCTTTGATTTTCAGTCAGATCATTTTTGGGATTATATACCCCACAATGCAGTGTGtgccacattcacacacttaatATGTCTATATGCTGTCTAACAACTGATAATGAAGTCTTTAGAATTTCTTGCTCTTTCTTTACCTCTTTGTACTATTTGTCGTGGTATCGTAGTATCTAGTGTAATAATTATTAGAGCACTTGCACATATTTTATGCATAAGATTTATGGTGACAGTTTGGACATAGGGGTAGCCAATATGGCAAAATTCGTTAACTCACGATTAATGCTGGATATCATAATATTCTGGTTTAGATATCAACAAAAATGTACTGCCACCACAGAGCTACATCTATGATTTCAATAAGTAGtatccacaaaaatatattatttaacacagaaacataaaagaataaatgaaaccTTTTTAAAGATCAAATCAGCTACTTGTTATTGTGATTATTAATTAAGGAGGTCAGGGTTGGACAATTCACTAGCCTAGTACCTGGTGGATTGGGACAAGAATATCATATGTACagtcttagttttttttttgttttgttttttttactccacAGAAAAGGCAGGCAACCTTTACATTGGACTGGGAAAGCACAACAACTTCTACTTGCCTGATGGGCTAGCTActaaatttatcatttgtccacccctgaaaGTACTGACAATAttcacaatatctcagaaaattatattgtgatgtaatttataAAGATATATTGCATTGTCATATCCCCAATTCCTATTTGGGAggcatacactgcaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580161.1 lncRNA upstream 44729 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA upstream 44729 5815909 ~ 5819066 (+) True LOC117599801
TU344190 lncRNA upstream 55879 5807006 ~ 5807916 (+) True G290569
TU344188 lncRNA upstream 58207 5804676 ~ 5805588 (+) True G290567
TU344187 lncRNA upstream 59455 5801798 ~ 5804340 (+) True G290566
TU344338 lncRNA downstream 267939 6135952 ~ 6160040 (+) False b4galt6
TU344375 lncRNA downstream 369701 6237714 ~ 6237916 (+) True G290699
TU344584 lncRNA downstream 474250 6342263 ~ 6342540 (+) True G290863
TU344600 lncRNA downstream 554659 6422672 ~ 6422966 (+) True G290879
TU344666 lncRNA downstream 845914 6713927 ~ 6727514 (+) True G290935
XM_034313451.1 mRNA upstream 7239 5844033 ~ 5856556 (+) False dhcr24
XM_026944360.2 mRNA upstream 7239 5844033 ~ 5856556 (+) True dhcr24
XM_026944357.2 mRNA upstream 7239 5844034 ~ 5856556 (+) False dhcr24
XM_026944585.2 mRNA upstream 62102 5735474 ~ 5801693 (+) False usp24
XM_026944673.2 mRNA downstream 7175 5875188 ~ 5887559 (+) False sirt5
XM_026944674.2 mRNA downstream 7356 5875369 ~ 5887559 (+) True sirt5
XM_034313459.1 mRNA downstream 36681 5904694 ~ 5945486 (+) True adcy1a
XM_026944389.2 mRNA downstream 37008 5905021 ~ 5945486 (+) False adcy1a
XM_026944681.2 mRNA downstream 90418 5958431 ~ 5961185 (+) True igfbp1a
XR_004580141.1 other upstream 62102 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 884395 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 1144729 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1721355 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 2015205 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 2016632 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 2019515 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile