RNA id: XM_034313451.1


Basic Information

Item Value
RNA id XM_034313451.1
length 2539
RNA type mRNA
GC content 0.43
exon number 10
gene id dhcr24
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5844033 ~ 5856556 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCTTTATTTATAGTGCACTACTTATGGTACAGAACTCATTATTTGACGTCGTATCTAGTGCTCTAGTGTAGGGAATAGGTTGTGGCTTGGTATTCAGCCTTACACAAGGTGTAAAAtcaggcaaataaataaatgtgacaaaATTCGCGGTTGCACGTTTTAACCCAAGTGTGAAGGCAGTCCTAAAAAGTGCAGGATCAGGTAAGATGGATCCAATGCTGTATCTCGGTGTTTTGGTTATTTTGTTGCTTCTGTGGATCAGGATAAAAGGCTTAGATTATGTTCTAATTCACCAGCGATGGATATTTGTTTGCCTTTTCCTTCTGCCCTTGTCTGTGGTGTTTGATGCCTATTATTATGTGCGAGCTTGGATCATCTTTAAGATGTGCTCAGCGCCCAAGCTGCACAATCAGCGGGTCCGGGACATCCAGAGACAGGTTCGTGAGTGGAAGAAGGAGGGAGGAAAGGCATATATGTGCACTGGACGTCCTGGCTGGCTGACCGTGTCTCTGAGGGTGGGGAAATATAAGAAGACTCACAAGAATATAAAAATCAATATGATGGATATTCTAGAGGTGGACACAGAAAGACAGGTGGTACGTGTGGAGCCCTTGGTAAATATGGGTCAAGTGACAGCCTTATTGAATTCCATCGGCTGGACGCTGCCTGTATTACCTGAGCTTGATGATCTCACAGTAGggGGTTTGGTAATGGGCACAGGGATTGAGTCCTCGTCTCATATTTATGGCCTGTTCCAACACATCTGTGTGGCTTTTGAGCTGGTACTGGCAGATGGCAGTCTGGTTCGCTGCACTGAGAAAGAGAACTCGGAGCTGTTCTATTCGGTCCCGTGGTCCTGCGGAACCCTGGGCTTCTTGGTGGCAGCTGAGATTCGCATTATTCCAGCTCGGAAGTGGGTGAGGCTGTGCTACAAGCCCGTGCGGGGTTTGGATGCCATCTGTAAGGTGTTTGCAGAGGAGTCAGCTAACAAAGAGAACCATTTTGTGGAAGGGCTGCAGTATTCGCTCAACGAGGCTGTTATTATGACTGGAGTTATGACTGACCACGCCGAGCCTGACAAGATCAATCGCATTGGTCACTTCTACAAGCCCTGGTTCTTTAAGCACGTGGAGAAGTACCTGAAGGAGGATGGAATTGGTGTGGAGTACATCCCACTCAGACACtactaccacagacacacacgaaGCATCTTCTGGGAGCTACAGGACATCATTCCTTTTGGGAATAACCCGCTGTTCAGGTATTTGTTTGGCTGGATGGTTCCTCCTAAGATCTCCCTGCTGAAGCTGACTCAGGGCGAGACCATCCGCCGGCTTTACGAGCAGCATCACGTGGTTCAGGACATGCTGGTGCCCATGAAACACATGCACACGGCCATCTCACACTTCCACAAGAACATTCATgtgtatcCCTTATGGCTGTGCCCATTCATATTGCCCAGTCGGCCAGGCATGGTGCATCCTAAAGGAGATGAAGATGAGCTGTATGTGGATATTGGAGCATACGGGGAACCCCAAGTCAAACACTTTGAGGCTCGGGCCTCAACACGCCAGCTTGAGAAGTTTGTCCGAGATGTACACggTTTCCAGATGCTTTATGCTGATGTGTACATGGACCAGCAAGAATTCTGGGAAATGTTTGATGGTGAGCTGTATCATAAGCTAAGGGAGGAGCTGGACTGTGAGCAGGCATTTCCTGAAGTGTACAACAAAATCTGCAAAGCTGCAAGACACTAAATTCAGTCCTGATTGAAAtacaggaaaaagagaaaatggaattaattaaaattataagcTCGTGAAAAGTCAACCAGCTGTAGACAGTATTACCAGCTATCTTTTTTAATTGGATTTTTAAGACTAGTCATATACACTTGAGCcttcttacatttaaatattttttggcaagcaatataaataaagggaatatcagtaaaatatattttctacaCTGAATATTGTCCTTTTTTACGTGCATCTAAATGATATATTTTGTCAGTGAAAGTATAAAAtgaaagtatattttaataCCTATTTCCCCAGTGTCATTCTCATAGTAAATCTGCCTTCAAGCTCTAGGGCAAATTGCTGTCCAAGTTTGCCTTGTATATCAACGCACAACTTTATAACTCGTGACAGCAGGTATTGCTTTTCCATAAGTGCCACCTGTAAAACCTccttaatgtatttttttctcttacaaatgaacaaaacacaaaatacagactGCTCTTATGTCAATGAAGTGTGTCtttaaattattctttttttcacttttgccATCATTGTTGGTTTTAGATCGTGACCCTCTTACAGTATTGTGTTTGCTGCTTAGATCACACAAGATTTTGGCATGTGAACATTAGCAATCTTATTGTTCCAATCTCAAGACTGGTTTCTGGGTTCATTCTCAGTAGCCCAgataattttcattatttaatccTGATGTATTTCTTTTATAAGGGGTTTGggatgtgtgtgctgtatatGGTGCAATAAAATTCAAATCTGTCAATA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580161.1 lncRNA upstream 24967 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA upstream 24967 5815909 ~ 5819066 (+) True LOC117599801
TU344190 lncRNA upstream 36117 5807006 ~ 5807916 (+) True G290569
TU344188 lncRNA upstream 38445 5804676 ~ 5805588 (+) True G290567
TU344187 lncRNA upstream 39693 5801798 ~ 5804340 (+) True G290566
TU344338 lncRNA downstream 279396 6135952 ~ 6160040 (+) False b4galt6
TU344375 lncRNA downstream 381158 6237714 ~ 6237916 (+) True G290699
TU344584 lncRNA downstream 485707 6342263 ~ 6342540 (+) True G290863
TU344600 lncRNA downstream 566116 6422672 ~ 6422966 (+) True G290879
TU344666 lncRNA downstream 857371 6713927 ~ 6727514 (+) True G290935
XM_026944585.2 mRNA upstream 42340 5735474 ~ 5801693 (+) False usp24
XM_026944586.2 mRNA upstream 42340 5735474 ~ 5801693 (+) False usp24
XM_026944339.1 mRNA upstream 268463 5542956 ~ 5575570 (+) True plpp3
XM_026944340.1 mRNA upstream 269053 5542956 ~ 5574980 (+) False plpp3
XM_034313904.1 mRNA upstream 323400 5505839 ~ 5520633 (+) True LOC113545193
XM_026944354.2 mRNA downstream 7035 5863591 ~ 5868013 (+) False si:ch211-121a2.4
XM_034313792.1 mRNA downstream 7239 5863795 ~ 5868013 (+) True si:ch211-121a2.4
XM_026944673.2 mRNA downstream 18632 5875188 ~ 5887559 (+) False sirt5
XM_026944674.2 mRNA downstream 18813 5875369 ~ 5887559 (+) True sirt5
XM_034313459.1 mRNA downstream 48138 5904694 ~ 5945486 (+) True adcy1a
XR_004580141.1 other upstream 42340 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 864633 4941951 ~ 4979400 (+) False dnm3a
XR_004580099.1 other upstream 864633 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 865178 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other upstream 869972 4941951 ~ 4974061 (+) False dnm3a
XR_004580167.1 other downstream 1156186 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1732812 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 2026662 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 2028089 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 2030972 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile