Item | Value |
---|---|
RNA id | XM_026944361.2 |
length | 2645 |
RNA type | mRNA |
GC content | 0.55 |
exon number | 2 |
gene id | bmp2b |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047613.1 |
NCBI id | CM018559.1 |
chromosome length | 22090854 |
location | 9037111 ~ 9041907 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
id | name | namespace |
---|---|---|
GO:0001710 | mesodermal cell fate commitment | biological_process |
GO:0060876 | semicircular canal formation | biological_process |
GO:0055015 | ventricular cardiac muscle cell development | biological_process |
GO:0045168 | cell-cell signaling involved in cell fate commitment | biological_process |
GO:0048264 | determination of ventral identity | biological_process |
GO:0030509 | BMP signaling pathway | biological_process |
GO:0040007 | growth | biological_process |
GO:0007368 | determination of left/right symmetry | biological_process |
GO:0001889 | liver development | biological_process |
GO:0060030 | dorsal convergence | biological_process |
GO:0030903 | notochord development | biological_process |
GO:0042664 | negative regulation of endodermal cell fate specification | biological_process |
GO:0005576 | extracellular region | cellular_component |
GO:0042803 | protein homodimerization activity | molecular_function |
GO:0046982 | protein heterodimerization activity | molecular_function |
GO:0008083 | growth factor activity | molecular_function |
id | description |
---|---|
K04662 | BMP4; bone morphogenetic protein 4 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU346095 | lncRNA | upstream | 331867 | 8705054 ~ 8705244 (+) | True | G292102 |
TU346063 | lncRNA | upstream | 451209 | 8584219 ~ 8585902 (+) | True | G292074 |
TU346061 | lncRNA | upstream | 453634 | 8582950 ~ 8583477 (+) | True | G292072 |
XR_003404603.2 | lncRNA | upstream | 502611 | 8488969 ~ 8534500 (+) | False | LOC113545369 |
TU346720 | lncRNA | downstream | 366585 | 9408492 ~ 9408714 (+) | True | G292654 |
TU346709 | lncRNA | downstream | 372644 | 9414551 ~ 9415576 (+) | True | G292643 |
TU346871 | lncRNA | downstream | 512530 | 9554437 ~ 9554807 (+) | True | G292765 |
TU346877 | lncRNA | downstream | 545793 | 9587700 ~ 9587903 (+) | True | G292771 |
TU346862 | lncRNA | downstream | 570081 | 9611988 ~ 9612612 (+) | True | G292756 |
XM_026944403.2 | mRNA | upstream | 46582 | 8987232 ~ 8990529 (+) | True | chgb |
XM_026944503.2 | mRNA | upstream | 90110 | 8940392 ~ 8947001 (+) | True | gzf1 |
XM_026944500.2 | mRNA | upstream | 332126 | 8636450 ~ 8704985 (+) | True | atad2b |
XM_034313707.1 | mRNA | upstream | 335660 | 8636450 ~ 8701451 (+) | False | atad2b |
XM_026944368.2 | mRNA | upstream | 431128 | 8600411 ~ 8605983 (+) | False | wdcp |
XM_026944484.2 | mRNA | downstream | 32121 | 9074028 ~ 9179173 (+) | True | LOC113545247 |
XM_026944485.2 | mRNA | downstream | 32121 | 9074028 ~ 9179173 (+) | False | LOC113545247 |
XM_026944486.2 | mRNA | downstream | 32121 | 9074028 ~ 9179173 (+) | False | LOC113545247 |
XM_026944487.2 | mRNA | downstream | 32121 | 9074028 ~ 9176495 (+) | False | LOC113545247 |
XM_034313791.1 | mRNA | downstream | 32121 | 9074028 ~ 9160901 (+) | False | LOC113545247 |
TU346212 | other | upstream | 40115 | 8993513 ~ 8996996 (+) | True | G292216 |
trnak-uuu_18 | other | upstream | 145371 | 8891668 ~ 8891740 (+) | True | trnak-uuu_18 |
TU345969 | other | upstream | 527628 | 8488647 ~ 8509483 (+) | False | LOC113545369 |
TU345691 | other | upstream | 962674 | 8043399 ~ 8074437 (+) | False | nudt14 |
trnaa-cgc_7 | other | upstream | 1148275 | 7888765 ~ 7888836 (+) | True | trnaa-cgc_7 |
XR_004580138.1 | other | downstream | 32121 | 9074028 ~ 9160901 (+) | False | LOC113545247 |
TU347160 | other | downstream | 861843 | 9903750 ~ 9950731 (+) | True | G293016 |
TU347333 | other | downstream | 1117048 | 10158955 ~ 10161751 (+) | False | LOC117599798 |
TU347771 | other | downstream | 1977009 | 11018916 ~ 11024973 (+) | False | G293528 |
trnai-aau_1 | other | downstream | 2101980 | 11143887 ~ 11143960 (+) | True | trnai-aau_1 |