RNA id: XM_034313447.1


Basic Information

Item Value
RNA id XM_034313447.1
length 2539
RNA type mRNA
GC content 0.55
exon number 3
gene id bmp2b
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9037111 ~ 9041907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACATCACCCGAAAACAAAAAGCCTAGAGCCGTGAGCGGCGCGCGCTGCAATCTACGCGCCCACGGCAGCGCGCGCTAACACGCGGAGATGACGTTCCCAAGTGAATGCGTGCACAACCCGCGACTTCACCACAGCTTATACACACTTCTCCTGGCTAACAGGCTAGAAACATGTCCGAACCAGAAGTCGTTTCTTCTCACCGCTCACGTTTGCGCAGACGCGTTCGTTTGACCTTATAATCACGTTCTACTCGGCGCGAGCGTGCTCGGGTTGCTAGTTCGGCGCGTGTCGACACGGCGAGTGTGAGCGCGAGGACGCGAGCTAAAGAACTCAGTAGGGGCGAGCGGCTGCAGCGCGCTCAtatatcagattaaaaaaaaaagtcgctgtGGATTAACGTGGATTATTGTGGAATTTCAAGGACAGTGCTGCAGGGAAAGCGAGTGAGCACAGCACATCACCGACTGTGTGGTAATTCCTTCCCAAGTTAGGGGTAGTGTTTAATGGGTTGGGGGGGAGTTACATCTTCCTGGGACATCAAGATAATTGAAGGTGTTTTGGACATTCAGGTGTTTGTCGTAGGCGTCTACCACCTGTAGCTCAaagtctctctcgctctctctctctctctctctctctcgctctctttttaTTCAGCTGTAAAACTGGCACGCGCGCGCAGAGCTGCAAACCCTAAAACCGCACCGAGTTTCTTTTTAGCCCAGAGttccccgtctctctctctctctctctctctctctctctgacttttcCTTTTATGCCTGGCCTGATGTGAAGCTCTGAAGGCAGAGCGTGTAGTGTAGACATGTGTTGTTCAGTGTACACCCCCCACCCAGACCGTGCCCCTCTTATCTCAGCTTAATTGCAGCCTCGATGTCTGCTGTCTTCGCGTCTCCTTTCTTTCAGTATCTTTGATTCAGCGTCTCATCTCATCTCCACTCGCTGTTTGGTTTGACATCCTCTTTCAGGCTCCCTTACGTGCTCGAGCTCGAACGCCTTCAGATCCGGAGATCACCGGCTTGtggcgagagagagggagagagagagagagagagagagagagagagagagagcgggctGGAGGCTGGGCGCTCGCGCGGATCGGGGGTCCATGCGCGGTGTCGCCGCCTGACGCGAGCTCGGCCCGGGAGCTCTAAGCCCTCCTCCTCTGTGCCCTCTCTCTGAGAATGGTAGCCGTGCTCCGCTCGGTCGTGGCGCTCGTGCTGCTGCTCGGTCAGGTGTGGCTGGGCGCCGCCGCCGGTCTCATTCCCGACGTGGAGCGGCGAAGGCACGCGCCCGAGCACTCCGAGCGCTTTCTTCGCGACTTCGAGCTCCGACTGCTGAACATGTTCGGCTTAAAGCGGAAACCCACGCCGAGCAAGGGAGCCGTGGTACCTCAGTACATGCTGGACCTCTACTACATGCACTCGGAGAACGGAGACCAGAAAAGCGTCCGGCGGCCCAGGAGCGTCATGGGGAGGCACGCGGAGCGCGCGGCCAGCAGGGCCAACACCATCCGGAGTTTCCATCACGAAGaggCTTTAGAGGCCCTGTCCAGCCTGAAAGGAAGGACCACACAGCAGCTGTTTTTTAACCTCACTTCAGTTCCAGCAGAGGAGCTGATCACGGCTGCAGAGCTACGCATCTTCAGAGACCAGGTGCTCAGTGACTTTACTCAGAGCAACACAAGTCGCGCTGGAGCCTTTCAGCGCATTAACATTTTTGAGGTGTTTAGGCCAGCTCATTCCCCCTCACAGGAGCCTCTCACCAGACTTTTGGACACTCGTCTGGTACAGGACTCACACTCACGCTGGGAAAGCTTTGATGTAAGCTCAGCTGCAGCACGCTGGGCCACACAGCCACACCACAACCATGGCCTCATGGTGGAGATTCTGCACCCAGGCGAGGCCAGTGATGGTGAGGAGGCCGAGGCAAGCAGGAGTAGACATGTCAGGGTGAGCCGGTCCCTACATGCCGACAGTGAATCCTGGACTCAGGCTCGGCCACTGCTGGTCACTTACAGCCACGATGGCCAGGGCACTGCAACGCTCCACAGAGAAAAGCGGCAGGTGCGGCGTCCACCCAAACAGCGGCGCAAACAGCAGCGAGCCAACTGCCGCCGGCACCCACTCTATGTAGACTTTAGTGATGTGGGCTGGAACGTGTGGATTGTGGCACCACCGGGCTACCACGCCTTTTACTGCCAAGGCGAGTGCCCGTTCCCACTGTCAGACCACCTGAACTCCACCAACCATGCCATTGTGCAGACCCTTGTGAATTCTGTGAACTCTAATGTGCCACGGGCATGTTGCGTACCCACAGAGCTCAGTCCCATCTCTCTGCTCTACCTGGATGAGTATGAGAAGGTCGTCTTAAAGAACTATCAAGACATGGTGGTGGAGGGCTGCGGCTGCCGATGAGAACTAAACTCATGAAACTTAtgaagactttttttatttatatgaaagaACTTTCAAAAAGAgttattttggaaaaaagaaatattttatacatata

Function

GO:

id name namespace
GO:0001710 mesodermal cell fate commitment biological_process
GO:0060876 semicircular canal formation biological_process
GO:0055015 ventricular cardiac muscle cell development biological_process
GO:0045168 cell-cell signaling involved in cell fate commitment biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0040007 growth biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001889 liver development biological_process
GO:0060030 dorsal convergence biological_process
GO:0030903 notochord development biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005576 extracellular region cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346095 lncRNA upstream 331867 8705054 ~ 8705244 (+) True G292102
TU346063 lncRNA upstream 451209 8584219 ~ 8585902 (+) True G292074
TU346061 lncRNA upstream 453634 8582950 ~ 8583477 (+) True G292072
XR_003404603.2 lncRNA upstream 502611 8488969 ~ 8534500 (+) False LOC113545369
TU346720 lncRNA downstream 366585 9408492 ~ 9408714 (+) True G292654
TU346709 lncRNA downstream 372644 9414551 ~ 9415576 (+) True G292643
TU346871 lncRNA downstream 512530 9554437 ~ 9554807 (+) True G292765
TU346877 lncRNA downstream 545793 9587700 ~ 9587903 (+) True G292771
TU346862 lncRNA downstream 570081 9611988 ~ 9612612 (+) True G292756
XM_026944403.2 mRNA upstream 46582 8987232 ~ 8990529 (+) True chgb
XM_026944503.2 mRNA upstream 90110 8940392 ~ 8947001 (+) True gzf1
XM_026944500.2 mRNA upstream 332126 8636450 ~ 8704985 (+) True atad2b
XM_034313707.1 mRNA upstream 335660 8636450 ~ 8701451 (+) False atad2b
XM_026944369.2 mRNA upstream 431128 8600625 ~ 8605983 (+) True wdcp
XM_026944484.2 mRNA downstream 32121 9074028 ~ 9179173 (+) True LOC113545247
XM_026944485.2 mRNA downstream 32121 9074028 ~ 9179173 (+) False LOC113545247
XM_026944486.2 mRNA downstream 32121 9074028 ~ 9179173 (+) False LOC113545247
XM_026944487.2 mRNA downstream 32121 9074028 ~ 9176495 (+) False LOC113545247
XM_034313791.1 mRNA downstream 32121 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 40115 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 145371 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 527628 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 962674 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 1148275 7888765 ~ 7888836 (+) True trnaa-cgc_7
XR_004580138.1 other downstream 32121 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 861843 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 1117048 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 1977009 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 2101980 11143887 ~ 11143960 (+) True trnai-aau_1

Expression Profile