RNA id: XM_026944368.2


Basic Information

Item Value
RNA id XM_026944368.2
length 2552
RNA type mRNA
GC content 0.47
exon number 4
gene id wdcp
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8600411 ~ 8605983 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTAACTTGTTTCCGTTTGTCCAATACTTTAAACATGTCCGAGTAGAAACATAACCCGTATTAAATACTGTCAGTATTTTAGTTTGCTTTTGTTTCAACATAATGATGACCTAACAAGCATGGAATTAGGAAAAGCTAAACTTCTGAGGACTGGACTCAATACTTTGCACCAAGCCATTCATCCTGTCCATGGGATAGCCTGGACAGATGGGAGACAGGTTTGCCTCACCTCATTCTACTATGTTGCCGGTGAACCTAAATTTGGGGACACAAACGTAATTGGACAATTTGAACATGTGTTTGGACTTTTCTGGGGACCTCTGTGTTGCTCGGGGTCTCCTGCTCTGCTCGCGGTGCAGCACAAGAAGCATGTGACGGTGTGGCAGCTTCAGCTGAGTGCCCTCGAGCAGAACAAGCTGCTGTGCACCCAGACGTGTGAAATGAGTGAGCCTTTCCCACTGCTGTCTCAGGGCTGTGTGTGGCACCCCAGACAAGACACCCTGGCGGTTTTGACTAAGCAGGATGCCTCTGTGCTGTTCTCTGTGCGAGTGGATAATCGTCGAGTGAAGGCAGACATCCGTGGCAGTGGTCAAATCCACTGTGCATGCTGGACTAAAGACGGAACCAGACTGGTGGTTGCCATTGGTAGCGCTCTTCACTCCTATATATGGAACGACATCCAGAAAAGTCTGGTGGCGTGTTCATTTTGCCCTGTTTTTGATGTTGGGGGCCATATCTGTGCCATTGAGTCTACCGATGAGGCTCAGGTGGCTGTTACAACAGAACTGCCCCTAGATAAAATCTGTGGGCTTAATGCAGGTATTGCCTTTGATTTACCAAATGAATCAAAGCCATTGTCCTCACATCAGTGTCCTGCTGTAATTTCAGAAGATGATATTTGCTCAGAATCCAGGAGAATGTCCTTTGACTCTGAGCGTTCACTACCTTTAGGGTTCATTTCATCCTCTGGCTCCACTGACCTTACGCACATTCTGGCAAAACACCGAAAGTCAGACCCAAGCCCTTTGATTCACCTGAGGCGACGAGATCATTTGACAGGATCAGGTCAAGATTCGTCACATTTGATTTTGGTCAAGTACGAGAAAAAGGTCACGACCACCAGGAAAGTAAGCATCCCTGGTATTCTGGTCCCTGATATCATGGCCTTTGATCCGCAAGGAAACATAGTCGCGGTGGCATCCAATACCTGCAACGTGGTGTTGGTCTACTCCATCATGGCGTCCTCCATGCCCAACGTTCAACAGATCCACCTGCAGAAGAATGAAAGACCTAAAGGCTTATGCTTCCTTAGCAGCAAGCAGATCCTAGTCATGCTTGGCCGACAGAGGTCCAACGACCCAGCCTTCCTTCCGTCTTCCAACACGGACAAATACATCCTCAGGCTCGCAGCTCGGGAGCTGGTGTTTGACGAGGGCAGTTGTCCAACATCTCCAGTTGTCCAGAAGCCTGAGTCTCCGAGTGATCTCCATGAGTTTAGGCGTCATTCGGAGGCCTACGCTAAAGATTTTGCAGTGAAGGACCTTGTTCTTCCAGGGGGATCAGTAAACCTGTCATCAAATATCAGGAAGAAGCTAATTGAGGAAGTGTGTACCTCCGAGTCAAGCTCAGCCGACTTCTCAGACAGAGCCACTTCCAGCACCTCCTCCATCACTTTGGAAAACTACGATATGGATCATGTCAATCGCATGGCCACGCTAGCAATAGCCAGCCATGCCAACAATGAATCCACTCGACCATCTTCCCCTCGATACACAGCATCAGAAAAGTTGCTCACTGATTCTCCTCTGCTGAAGAACAGCTGTCTGGCAAAAGAGAATAACCTCGAACAACTCGCAAACAACATGGAGAAGATATTTGCCCGCTTTGCAGAGGTGCAGCAGTGCCTCTCGGAAATCAAAGACTTCACCCACAATGGGAAAAAGCTCATGAGCAGCTACCCATCTGCTTGTGAACCACAATATGTCCATGTTACGTGTCAGATGCAGCTGTCAGAGAACGTGTACACGGATGAAAGGAGACCAGTGCTGTTGTGTGAAGGGAAACTCTGTCTCCGAGTCCTGCAGGAACTCTTCAACCTGACTGTTATGGAGATGATGCATGGGCCAATGTGGATTATCCTAGTGGCCGATGCAGACGGATTTGTACCGCTCACTTTCAAGCACCAGGAGGAGCTCACCATACGGAGTGCAAAGAGGAAGCTTCCCTTCAAGTCTGCCAACGGGAGCAATGACCTACCTCTTGAAAATCAACAAATATAGAACagtgattttgtgcattgtagCCTTTCCAGTCCAAACACTCCCCACTCCACTACTGAACATCATGTTGAGAAGACAATGCCTCATAATGAATGTTTACAGGGCAATAGTGGCTTTGTTGTATATAAATGAAGACCAGTTCTATTTTTATACATCATAAAGAAAATACTTGAGTGCCTGCTTTTAtggtttaatatttattgttgGTGTAAACACCTGTCATGCATCTCAGGAGAAAATAGATtgttaacaaataaaattgtaatgattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346063 lncRNA upstream 14509 8584219 ~ 8585902 (+) True G292074
TU346061 lncRNA upstream 16934 8582950 ~ 8583477 (+) True G292072
XR_004580077.1 lncRNA upstream 65911 8488969 ~ 8534500 (+) True LOC113545369
XR_003404603.2 lncRNA upstream 65911 8488969 ~ 8534500 (+) False LOC113545369
TU345980 lncRNA upstream 89635 8510569 ~ 8510776 (+) True G291996
TU346095 lncRNA downstream 99071 8705054 ~ 8705244 (+) True G292102
TU346720 lncRNA downstream 802509 9408492 ~ 9408714 (+) True G292654
TU346709 lncRNA downstream 808568 9414551 ~ 9415576 (+) True G292643
TU346871 lncRNA downstream 948454 9554437 ~ 9554807 (+) True G292765
TU346877 lncRNA downstream 981717 9587700 ~ 9587903 (+) True G292771
XM_026944651.2 mRNA upstream 42666 8549942 ~ 8557745 (+) True LOC113545337
XM_026944480.2 mRNA upstream 140683 8446316 ~ 8459728 (+) True clic5b
XM_034313589.1 mRNA upstream 294812 8296614 ~ 8305599 (+) False LOC113545195
XM_034313590.1 mRNA upstream 294812 8296614 ~ 8305599 (+) False LOC113545195
XM_026944397.2 mRNA upstream 299672 8296614 ~ 8300739 (+) True LOC113545195
XM_026944500.2 mRNA downstream 30467 8636450 ~ 8704985 (+) True atad2b
XM_034313707.1 mRNA downstream 30467 8636450 ~ 8701451 (+) False atad2b
XM_026944503.2 mRNA downstream 334409 8940392 ~ 8947001 (+) True gzf1
XM_026944403.2 mRNA downstream 381249 8987232 ~ 8990529 (+) True chgb
XM_026944361.2 mRNA downstream 431128 9037111 ~ 9041907 (+) True bmp2b
TU345969 other upstream 90928 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 525974 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 711575 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 712331 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 712812 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnak-uuu_18 other downstream 285685 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 387530 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 468045 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1297767 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 1552972 10158955 ~ 10161751 (+) False LOC117599798

Expression Profile