RNA id: XM_026944387.2


Basic Information

Item Value
RNA id XM_026944387.2
length 4475
RNA type mRNA
GC content 0.43
exon number 10
gene id esr2a
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8173162 ~ 8190581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTATGCGCGTGTAATGTGTGCACAGGCGAGTTGGCTCAGAGCAGCACCGAACAGCACTCAACTGAATAAAGTATCTACACACTGAAGCAGTGAATTTACAGTAGATTTCCACGCTTTGACATTTTTTGCCTTTATAGAGGCCTTTGATAATGACGCAAGGCGGTAACACGGGAAGCAGCAACAAGTCCGTGTTGGGAGAGCATCAATAACTTCCTTTTTAAAGACCGAATTTCGGAGAAGCCCGGTGGTCGGTGAATTCGACACTGCAGGGTAGGTGATGTGGAAGATATCCTGAAGAAAATGCATTGAGTCCCAGGTGATTACTGCTCATGCAGTCCTGCAATGATGATGTGTTAACTCTACAACCTGCCCAAAAGCTGCCTCAGTACGATTCTCTTCAGTTAAGATTTTGTTCTAGTGAGTATAATATTGTTCAAAGTCCTGAAATTCTACACGTGCAGTTTTTTTGGGGACCTTCAGCTCTACCATAAGCGTTGATGTAcaatggctgaccctgcgctttGACCCTAGCTTCCAGAAGGGTTTGGTtagattaattaataacatttaaaaacatttagaaatgtcAGAGTCTCCAGAGAGAGACGTCCCTCTGCTGCAGCTGCAGGAGGTCGATTCCAGCCGAGCAGCAGGCTGCGCTCTTTCATCCAGAATGAATTCCTCCTCCCCAGCCGTGGCAATGGAGAGCCACCCCATCTGCATTCCTTCACCCTATGCGGACATTGGGCACGATTTCACCACCCTGCCTTTCTACAGCCCCACCCTGCTCGGCTACAGCGGACCCCCACTTCCTGAATGCCCCTCAGTGCGTCAGTCACTCAGCCCCACGCTCTTCTGGCCCTCCCAGAGCCACATGGCACCTCTGGCACTGCATCGCCCACAATCCCACTGCCAGCAAAACCAGCCGAGCAATGGCACCTGGCAGGAGCTCACATCACGCAGTTACACAGCCAACGACAACAGCAAACCCGTGGGGAAACGGTCAGTGGAATGTGAGGAGAGCTTCAGTTCCTCAGAGAGCAAAACAGACATGCACTTCTGCGCTGTGTGCAGTGACTACGCCTCTGGCTACCACTATGGTGTCTGGTCCTGTGAGGGATGCAAAGCCTTCTTTAAAAGGAGTATCCAAGGACATAACGACTACATCTGTCCTGCAACCAACCAGTGCACCATTGATAAGAACCGGCGCAAGAGCTGCCAGGCCTGTCGGCTTCGCAAGTGTTATGAAGTAGGGATGATGAAATgtgGTATGCGTCGGGACCGTGGCAGCTACAATCGTGGAGGCTCACAGCAGAGGAGAGTGGCACGCTCTCCTGCCAGAGCAGTAGCGAGTAGTCAGAGACAGCCAGAACGGAAAGCAGCACCACCTACCAGGGTAAAGGAGGTTTTTACTGCCACACTGAGCCCAGAGGAGCTGATAGCTCGCATCATGGAAGCAGAGCCACCAGAAATCTATCTTATGAAGGACATGAAAAAGCCCTTTACTGAGGCCAATGTCATGATGTCACTCACCAACTTGGCTGACAAAGAACTTGTCCACATGATCAGCTGGGCCAAGAAGATCCCagGTTTTGTGGAGCTCAGCCTCTTTGACCAGGTGCATCTGTTGGAGTGTTGCTGGTTGGAGGTCCTGATGTTGGGGCTGATGTGGAGATCTGTTAATCATCCTGGAAAGCTCATTTTCTCCCCAGATCTTATCCTCAGCAGGGACGAGGGCAGCTGCGTACAGGGCTTTGTGGAAATCTTTGACATGTTGCTGGCTGCCACGTCCCGATTCAGAGAGCTGAAGTTACAGAGAGAGGAGTATGTCTGTCTCAAGGCCATGATCCTCCTCAACTCTAACATGTGTCTGAATTCAGCTGAGGCAGATGATGAACCTCAGAGCAGGACCAAACTGATGCAGTTACTGGACTCCGTGACGGACGCCCTGGTCTGGGCCATCTCAAAGATGGGCTTGAGCTTTCAGCAGCGTTCCACACGCCTGGCCCACCTGCTCATGCTGCTCTCGCACATACGTCATGCCAGTAACAAAGGTATGGACCACCTGCACTGcatgaagatgaagaaggtAGTGCCTCTGTATGACCTGCTCCTGGAGATGCTTGATGCCCACATCATGCACAGCTCACGTCTGCCCCACTCCACTGCGGCCATCGTGCCCGAGGAGAACCCTGGTGCACCGGAACCCTACAGCTGCTCCTCTCAGCAGTGGGCACAGACAGTTATGGAGGGGCCTATGGAGCTCAGCCAAAATGAGCAGCCATACAGCTCAAGGACATCAGTTTGGACCTGGAGACTCAAAGAACTGGACCAAATCAGCTGTATAAAGCCTTAAAATGCATAGCTTTGTGATAATAAGGATGTCACAGGTAAGCATTCCTGGAAGTCATATTTGTATTTAGTGGTTTTGCAAAACTCAGTGCATTTCTTGTGTCTTTTCTGAGCCTTTCTTTTATATAAGctgagatttctgttcttgatACTGTTAGAGGACAATTTTAAGACTTTTCCACTGTGAttgtttaaattacagctttaaTAAAAGTGTGACTTGTGTCACTCCTGcactgtaaattttaaaatgacaaatgcCACCCTGACCCCCAACAGAAATTATGATCAACTGTAAACACCATTTTGTGCCTGTACTAATTATTACTTCTGAGTGTTTGTAcgcacaaaacaaaaatacgcacaaaacacacatatatttacaatGACAGATCTTTTGTTATACCAGCTGGCAACATGCAACATAATCATATACTTATTGTATAATATCATATAGGAAACATAGAGATGAATGACAAACTAAAGGAAAAAACGGTGGTTTCTGCTGGCTTGATTTGAATCCACTTGGCCCTGCAGAGggaagggtcactgcaaataaatgcaaagttctcctgatcacctttatcctctGATGATACAAACCTACGCTGATGGGAATGGTCTTTTCCAGCATTAAAATGATCTGATTCACAGGGCATGGGGGCTTAGTGAATATTTGATAAGGATGAAAATAATGTATATCATATGCTTTGGCCTTCGTAGTTACTAGAGCTTAACCCAGTTGAACATATAAGAACTATAAGAGATTTTGAACAGATGTGCTAGACAGAGCTCtgtaccaccatcatcaaaacaccaactgagggaatatcttttggaagaattgTTCATCACTTGAGTACAGTTCTGGAGTTTTGTAAAATCTATGACAAGGCACATTGAAGCTGATCTAGTGGCAACACCTTAGTGAGGcagttaatgttgtttttttcctttaatttgtcaactGTCTGTATGTACCTTTATGCAAACAAAACACTTAAACCTAATTCAGGACAGCTGGTTTCATATTTGCTAATGACCAAActctcttagccaaaaagacaaGTTCAGGTAGTAAGACAAGAGCTAACCCTGCAACCAACGATGTGATAAAATGCACTGCCATAGTTTACACAACTTACAtttgcacttgtgtgtgtaatttgttgATAGCAGTTTAGCACGTGGCTTCCCAGTGCTTGATCATAGGCAGCATCTAGCTCCAAAGCATCAATTTATTTTCCAATTTTCTAGGCTGACTTTGTAGAGTGATCTGCTACACAATTTTCAACTATTGTCCACCAAAACACTGATGGCTGACACtgcaaaccaaaataaattaatacacttatctttttttttccaagctaAAAGCATGCAGCAattttgaaaggaaaaattgTAATGTTCACCTAAGGTGACTGTACAGATATAGCAAACATTTTGCAacactttttttatattctaattttttttctctaatacTTAATTCCTGCTACAGCTTCAGTGCTTTTCTCAACAGCAAGAGCAGATGgagaaattttgaaaaaaaaaagtatgacagcTACAAATGCCAATTATTATTAAGATTAACATAATATTAAGCAGTAGCATTAGAAGGCTGTAGATGCCATGATTTATAGATATGTGAGCTCATTATCACATAACACAATGTGAAATCCGCTTTGATTTACTGCATTATTATGTAGCCaaacatgattttttatttaactgaacTGGAGACATGATTATGTAAACTGTTATAAGATAAGATACCAGAAGTGTATCCTTATAAGAACCAAATGAATgatgtgttttcattttcacaatatTGTCTGTAATCATTTTCTATCGGTATTTGGTGAATATTATACATCGACAGTAAATAGAGGTGTTACAACTGTTGTTCAGTAGCATCATTGTGCTGCTATGTATCAGTTACAAATGTTGTTATAAACCATTCACGAAGAGGATTTTTTGCATTCTTTCAAatgtttcatgtgtgtgtttgtgtgtgtatgtgtgtgtgtgtgagcatgcaaAATTATTGGTACCGTTcatgaagatgaaaaaatattaacagttatattttaaaaggaTTTAAACAAAACGTAAAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030520 intracellular estrogen receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345697 lncRNA upstream 45264 8126021 ~ 8127898 (+) True G291769
XR_004580121.1 lncRNA upstream 225131 7945952 ~ 7948031 (+) True LOC117599748
TU345543 lncRNA upstream 336082 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 336082 7833330 ~ 7837080 (+) True G291644
TU345535 lncRNA upstream 391154 7777629 ~ 7782008 (+) False atp5mpl
TU345853 lncRNA downstream 118661 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 274256 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 280366 8470947 ~ 8473728 (+) True G291976
XR_004580077.1 lncRNA downstream 298388 8488969 ~ 8534500 (+) True LOC113545369
XR_003404603.2 lncRNA downstream 298388 8488969 ~ 8534500 (+) False LOC113545369
XM_026944501.2 mRNA upstream 47499 8088687 ~ 8125663 (+) True jag2b
XM_026944502.2 mRNA upstream 47499 8088687 ~ 8125663 (+) False jag2b
XM_026944614.2 mRNA upstream 98718 8043386 ~ 8074444 (+) True nudt14
XM_026944508.2 mRNA upstream 227350 7885793 ~ 7945812 (+) True brf1b
XM_026944507.2 mRNA upstream 227350 7885793 ~ 7945812 (+) False brf1b
XM_034313589.1 mRNA downstream 106033 8296614 ~ 8305599 (+) False LOC113545195
XM_034313590.1 mRNA downstream 106033 8296614 ~ 8305599 (+) False LOC113545195
XM_026944397.2 mRNA downstream 106033 8296614 ~ 8300739 (+) True LOC113545195
XM_026944480.2 mRNA downstream 255735 8446316 ~ 8459728 (+) True clic5b
XM_026944651.2 mRNA downstream 359361 8549942 ~ 8557745 (+) True LOC113545337
TU345691 other upstream 98725 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 284326 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 285082 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 285563 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 288446 7884645 ~ 7884716 (+) True trnaa-cgc_6
TU345969 other downstream 298066 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 701087 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 802932 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 883447 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1713169 9903750 ~ 9950731 (+) True G293016

Expression Profile