RNA id: XM_026944389.2


Basic Information

Item Value
RNA id XM_026944389.2
length 6271
RNA type mRNA
GC content 0.46
exon number 20
gene id adcy1a
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5904694 ~ 5945486 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAATGGCCCCGTTATGGAGGAAGTGCCGGTTTCTCGAGTCCACGCGCGGCGCAGAAAGAGGCGCCTGGCCAGGACGCCGCTTGCGGGGATTCCTTGCGAGGACGAGTTCGACTGCAAGGAGCTAGAGAGCCTTTTTCAGAAGTACAATCTGAAACTCGAGCAGACCGCAACGCTTAAAGCGCTGGCCGTGCTCATCCTCGCTGCGTCCGCGCTCGCGCTGGTCGAGCTGCTGTCCGCTGGCTCGCGCTTCACCGTCTCCAAGGGCTCGCACCCGGTGCACTGCGTCATCTTCACCTCGCTCTTCATCGTCACCAACGTCAAGTACCTGCAGGTGACGCAGCTGCAACAGATCGCCCGGCTCGCGCTGCTCTTCAGCTTCACGTTCGCGCTGCTCTGCTGCCCGTTTCCGCTCGCTCTCGGGCCTGGCACGCAGCACGGCGCGCACGGCGCACACGGACCCGACGCGGCCGCTGCTGCACCTGAGCAAGGTGTGTGGCAGCTCATGCTCGTCACATTCGTCGCTTACTCCCTGCTGCCGGTGCGAACCCTCTTAGCCGTCGTGTTCGGCGTGCTGGTCGCCGCGTCCCATTTTATCGTGACTGCCACGTCTCTAACTGCCCTCAGACCGCGCGTCTGGACTCCGCTGGTGGCAAATGCAGTGCTGCTGATTGGTGTGAACCTGTCGGGTGTATTCGTTCGAGTCCTTACTGAGCGTGCCCAGAGGAAGGCGTTTCTGCAAGCTAGGAGCTGCATCCAGGAACGCCTGCAGCTGGAAGACgaaaatgaaaaacagGAACGCCTCCTAATGAGTCTGCTACCCAGAAACGTTGCCATGGAGATGAAGGAGGACTTCCTCAAACCACCAGAAAGAATCTTCCACAAGATCTACATCCAGCGTCATGACAATGTgagTATCCTTTTTGCAGACATTGTTGGGTTCACCAGTTTGGCTTCTCAATGCACAGCTCAGGAGCTGGTCAAACTGTTGAACGAACTCTTCGGGAAGTTTGACGAGCTCGCTACAGAGAACCACTGCAGGAGGATAAAGATCCTGGGGGactgttattactgtgtgtCCGGTCTTACCCAACCCAAAGCTGACCATGCCCACTGCTGTGTGGAAATGGGACTTGACATGATTGACACCATCACGTCTGTTGCAGAGGCGACGGAGGTGGATCTGAACATGCGTGTGGGATTGCACACAGGTCGTGTGCTGTGTGGGGTTCTGGGATTGAGGAAGTGGCAGTATGATGTTTGGTCAAATGATGTCACGCTGGCGAACATGATGGAGGCAGGAGGACTTCCGGGTAAGGTTCATATCACCAGAGCCACTCTGGAATGTCTGAATGGAGATTACGAGGTAGAGCCAGGCTATGGGCATGAGAGACATGCCTTCCTCAGCAAACATGCCATCGAGACCTTTTTTATTGTGCCCTCTCACAGACGCAAGATTTTTCCTGGCTTGATTCTGTCTGATATAAAGCCAGCAAAGAAGATGAAGTTTAAGACGGTCTGCTACCTGCTTGTGCAGCTCATGCACTGTAGGAAAATGTTTAAGGCTGAGATTCCTTTCTCCAACGTCATGACCTGCGAGGACGATGATAAGAGGCGAGCTCTACGTACAGCATCAGAGAAGCTACGCAGCCGCACGTCCTTCTCGGGAGTAGCGCATAACTCACCCGGCACACGTGTGAACCGCTACATTGGAAGACTGATTGAAGCTCGGGAAACGGAATCGGAAACAGCAGATCTCAATTACATCACTCTGACCTACAggagcagagaaagagagagaacgtatcaGCAGGTGTATGATGATGGCTttatcagtgctgtggtgatctctctcctcctcacttCACTCTTCGCTCTCGTCTATTTTCTGATTATCCCTCAAGGTCTGGTGATTGTTATTTTGCTggttatttgtatctgttttcatATGGCGAGTGTAATGTATCTTCACATCACTCACGTGCAGTGCTCTCCGGACTGTCTTACTCTGCAGATCAGGACGGTTCTGTGTGGCTTTCTGGTCCTTCTGACGTATTCCGTAACCCAGGGCTGTGTGGTGGCGTGCATGCCATGGTCATGGGAGCGCAACTCCAGCGTCTCCATTATCACGGTTGTCATAGTGAACAGCACGACAGTGggcacaggtgtgtgtaaatACACTCCGTACGTGTTCTTATCTTGTGTGATGGCATCGCTGTCTGTGGCTCTATACCTCCGCGTGTCATCACTACCCAAGATTCTCCTGCTTCTCCTCCTCAACGTCCTCCATACCGTTGTCATGGAGACCAGTGGCTACCGGCAGGCTGTGGGaggAGGGTTCTTTCACACACATGGGTATGATCCTGTTCTAGCAATGCTCCTCTTCTCTGGTGCAATGATACTCCACTGCAGACAACAGGACCTCAAACTCAGACTTGACTACCTGTGGGCCAcacagGCTGAAGAGGAAAGAGATGACATGGAGAGGGTGAAACTGGACAATAAGAGGATTCTGTTTAACCTCCTTCCTGCCCATGTGGCCCAGCACTTTCTCCTGTCCAACCCACGCAACATGGACCTGTACTATCAGTCCTACTCTCAGGTGGGCGTCCTGTTCGCCTCCATCCCAAACTTCAATGACTTCTACATTGAGCTGGATGGAAACAACATGGGTGTAGAGTGTTTGCGGCTCCTTAACGAGATCATCGCAGACTTTGATGCAcTGCTGGATAAGGAGTGCTATAAGGACATTGAGAAGATTAAAACTATAGGCAGCACTTACATGGCAGCAGTGGGCCTTGTTCCTACCACTGGTTCTAAGGCCAAGAAGTCcatttctgaacatttatgCACAGTGGCTGACTTCGCCATAGAGATGTTCAGAGTTCTAGATGCGATAAACTACCAGTCATACAATGACTTTGTGCTTCGAGTGGGTATTAATGTAGGTCCAGTGGTTGCAGGAGTTATTGGTGCTCGTAGGCCTCAGTATGACATCTGGGGAAACACAGTGAATGTGGCCAGCAGGATGGACAGCACTGGAGTACAAGGCAAAATCCAgGTGACCGAAGATGTCTTCCGCCTCCTCTCTGGCCATTACCGTTTCCTATGCCGTGGTCAGGTCAGTGTGAAAGGCAAAGGTCAAATGCTCACCTACTTCCTAGAGAGTTGGTCTAATGAAGGCCCTCTCCAATCCTGCTCCCAGAGCCTGGAGCGCCGGGGAAGCCCGTGTATCCAGACCAAGTTGAGCAATGCCCCCACTGCAACCAGTTATGGGGTCAAAGCACAGAATATTGGCCCTGGTCCCACTTCCTCCAACAACAGCATCCTCTACCTGCCCTCCATCTCTGTCGACATGGAGATGGAGGTGTGACTGATGAGGAGGCACTTTTTATGGCAACCAACCTGTTAGTGAATCAAGGGGGAGTGAGACATGAAGGAGTGATGGGATGATGGAGGACACAGAGGAACACACTAGCATTGAGAAAGCTTGAGAAAAAGCAATGGGAGAGACGCATGACTGAGAAAAAAGAAGTCTTCGCTGTCCACAGGGTGACCGTGATGTTTATGAGAGATgagacagacatttaaatctcTCATGCAGAGAATAACCCTCCTccccacacacatgcaaacataaTGAGCAGGTTTgtctatttgtgtgtatgtttgtatgtgtgcatgtgcatgtgtatgtgtgtgagtgttcgtTTTAATGAGTCTTCCTCAGTCCAGCTAGATATCAGGGGCTCCTAAAGAGGAGCATGTGTTTTACAGTAATGGCAGCTTCACACCAACAAAGGAGCCACGCAcactcctctgtgtgtgagtttgtgtgtgtgtgtgtgtgtttatttgcctATGAAAATAATAAGTAACAGTAGGAATTTAATGCCACAGCATTAACCATTCAAAGCATGTGTATGCAGTGGGGACcaaacatttatcatttaaacagcgctgtattttacatttgtgtgtttgagttaaTGTGTGAATAACTGGCAGGGAGAGTATTTATGAGAATTTAGTACCATTATGAAACGAGTCAGTGCCCATGGCAtgacgaggaaaaaaaaaatcctactgGGGTTCTGTTTAGTCAGTGGGAAGTTTATGAAAACATGGGGCAATTCACAGCCTGTATTGATGTACAGAAAATTGAATTTCTGATTCGTATCCTTCAAAGTATTTCTTCTTGTTGCCTTTTTGAGTGAATTGAGTGAGTGTACAGATGCTACAGTATATCCAGAGGCTAAAATCTTGTAAATATAGTCCTGTTACCATTAACAATGGGATAAGCCGTGGGTTCCAAACATCAGTAAAGCTGCTAACGCTTACACACTGGTACTTCGAGTAGGAACATTCTTGACGTCAGTGCACACTTCCTGCTGCTCTTTGACCTTTTATTATGATGGAGATGTCGTGTCTGACACAATCACAAATACAGAAACAGCTTTTGTCTTGAATATACGACACACATTAAGGGTGACTGTGTGTTCCCAGAATTCACTAACAGTACATGTGAAATCAATATGTGAAGCAGTGGCTTAGCTGTTCATGAAGAATGAAATGTACTATATCAGCTGCAAAAAACTTACCTGTCCACTGGGGATAATGAGCAGCTTTTTATAAGTTTGAAAATAGCTCACATGGCTTGTTCTTATTTGTGGAAACAGTTGTGATATTTGTTCTATTCAGAGTTTCTAAGTAGGCTAACACTCAGCTGGATCTTGCTAGTGCTGGTTTCAAGGGAATTTAGCCCTGTGCTTGCACAAGAAGGAGTGCTAGCACAGGATAAACCCTGTATTCAATTTAAATGGCACAGTCAGCTGATGGTCTCTGTCATACATGCTCAGAATATATGGATCTTCATGCATTCAGAGTATAAAAAGGGACTTGGACAGCTTGGTTTTGTGGTCACAAAGTGTATTTGATCTGATCAGTTTGTctctcatatttattttatagctttTCATTTCTTGGTGAAATGCTACTGTAACTTTGATATTTCTCCAAATATGCCTAGGGAATGAAGTTGGCTTCAAGCTTGCCGTTCTGCATGTCCCCCTTCGCATGCCACAGTTCTACCTTGTCTTGTTCTTTTTGCTAAGTGCAATGTGACTCTAATGCATGACTAATGCACAAACCTGAACAAAAGGGTGAAACGTGTAATGGGTAATATTTAGAAAAGACTTTTAGTTGCACTGCATGAATGTAGGAACAGTGgccttttgttcattttactgtgtttttggTCTCAAACCTTTATCGACagcttgtttgctttttttctccatgcATGGTGCTGTGAAGTGTTGGAGAAAGCTTGGGAGTTTTGTAGCATTGCTGCCTTTTTTTGGCTCTTGAGGTGACTGCCTTCTATCCAGGGGTTGTTGGTTTGGGTGTATTCCTTTGTGCCAACACATTTTTGTTACCAACATATCAATTCCAGTGTTCTATTGTAGCACAATTTTGTGATATTGTGTTTGattctactttttaaaataatatagagTTTTATATGCACTGGATCCACCAAGGGTACAGTTTTGGCTTCCTATAAAACTTTGGGGTTGGATGTTTCAATGTTGGATGTCTTCTCCTGGGTTTTGGAGAAGTATATTTTCTTGAATATCCATTAGTCCTGGGTAATACATTTTTCGCTATTTAGTGTCATGAAATAAAGCTCTCTAAGCTTGTAATTGGACACGTCGTCACACTTTGAGCATTGTTGCACTTCTTATGGTCAACAACATGTGTTCACCCCAAAAGTGAAGGTTATATTATGGGAATATAACAACTGAGAAATCTTTCTATATGATAAATGTATATGAAAACCATTATATAAAAGCCAAACTCTTCATTTTATCTCTGAATATGCCTAGATCAGAGTTTATGATCAAACAAATGTAGCCACATGAAAAATTATCTATTTTCTATATACAAACTACAGTGGCCTAATATATCGCCATTCTAAATATTACAACTTTAATAATGCCTAAAATGTTCACAGTAAATAAACTAGATTTTCATGTTAATTAGATATTTTCATATATGATACGggtttaaaatattacatgtaTGGAATCTACTGCAGAATAAACTGAAAGTATTTTACTTATAACCTTAAATATATGTGCTATTTTTTGGGGTTGCATATTGATTGCAATGTTGATATATGTGAATGTAAATTTCATATTGAGATCTTTTATACTTGTGTTTGCACTGTTCTGGAATAAAATGACAATGAGAGACAGAGCTGGAATTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004016 adenylate cyclase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580161.1 lncRNA upstream 85955 5815902 ~ 5819066 (+) False LOC117599801
XR_004580162.1 lncRNA upstream 85955 5815909 ~ 5819066 (+) True LOC117599801
TU344190 lncRNA upstream 97105 5807006 ~ 5807916 (+) True G290569
TU344188 lncRNA upstream 99433 5804676 ~ 5805588 (+) True G290567
TU344187 lncRNA upstream 100681 5801798 ~ 5804340 (+) True G290566
TU344338 lncRNA downstream 190466 6135952 ~ 6160040 (+) False b4galt6
TU344375 lncRNA downstream 292228 6237714 ~ 6237916 (+) True G290699
TU344584 lncRNA downstream 396777 6342263 ~ 6342540 (+) True G290863
TU344600 lncRNA downstream 477186 6422672 ~ 6422966 (+) True G290879
TU344666 lncRNA downstream 768441 6713927 ~ 6727514 (+) True G290935
XM_026944673.2 mRNA upstream 17462 5875188 ~ 5887559 (+) False sirt5
XM_026944674.2 mRNA upstream 17462 5875369 ~ 5887559 (+) True sirt5
XM_026944354.2 mRNA upstream 37008 5863591 ~ 5868013 (+) False si:ch211-121a2.4
XM_034313792.1 mRNA upstream 37008 5863795 ~ 5868013 (+) True si:ch211-121a2.4
XM_026944357.2 mRNA upstream 48465 5844034 ~ 5856556 (+) False dhcr24
XM_026944681.2 mRNA downstream 12945 5958431 ~ 5961185 (+) True igfbp1a
XM_026944687.2 mRNA downstream 123121 6068607 ~ 6075045 (+) True mcm3l
XM_026944689.2 mRNA downstream 124138 6069624 ~ 6075045 (+) False mcm3l
XM_026944682.2 mRNA downstream 144940 6090426 ~ 6127902 (+) True trappc8
XM_026944683.2 mRNA downstream 144940 6090426 ~ 6127902 (+) False trappc8
XR_004580141.1 other upstream 103328 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 925621 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 1067256 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 1643882 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 1937732 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 1939159 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 1942042 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile