RNA id: XM_026944397.2


Basic Information

Item Value
RNA id XM_026944397.2
length 1783
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113545195
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8296614 ~ 8305599 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTGTAGTAGCGCTTAGAGTAATTCATACCTGATGTATAGTAGTGCACTTTTATAGGAAATAGGGAgctatttgggattcagcctgtaacatacatagatatatactgtatatctgcagGGGTAGTCAGTTTGCAAGTCAAGAAGTTTAAGTTGACATTCCAGGTGAAGTATTTTAACCGTTAACGGATCAAATGGATTTTCCAAAACTGCCACCTCATGATGGGCCCGTTTTGTCTGTGGTCGACATGCACACTGGAGGAGAACCTTTACGCGTCATCGTAAGTGGGTACCCCACTGTGAGCGGGGACACTGTGCTCGCCAAGCGGCGGTATGTACGAGACCATCTCGATCATCTTCGCAAAGTGCTAATGTTCGAGCCCCGTGGCCACTATGATATGTACGGAGCCTTATTAGTCGAAAGCGAGATACCAGAAGCAGATCTTGGGGTTCTGTTTATGCACAATGAGGGTTACAGCACCATGTGTGGCCATGCTGTCATTGCTCTTGGCCGTTTTGCTATAGACTATGGTTTGGTAAAGACTCCATCTTCTCCCGAGACCCAAATAAACATCCACTGTCCATGCGGCCTGGTGAAGGCTTTTGTGGAATATAACTACGGTAAAACAGGAGCAGTGAGGTTCCACAGCGTCCCAGCTTTTGCTTTCGCCACAGATGTGAAAGTCACTGTTCCAGGATATGGTGAAATCACAGTGGACATAAGCTATGGAGGAGCGCTCTATGCTTTCGTGAATGCTGAAATATTTGGACTGGATGTCAATAAGTCCAGAACCAGAGATTTGGTTGATGCAGCCACTGCTGTTACTAATGCAGTCAAATCTCAGGTGAAGCTCCACCATCCTGTTAGTGAAGATCTGGCTTTCCTATATGGCACCATCCTCACAGATGGTAAAGATGATTTCTCTGATGAGCCTAcagccaatgtgtgtgtgtttgctgatgcCCAGGTGGACAGGAGCCCCACTGGTTCTGGTGTAACTGCTCGCATTGCTCTGCAGTACCACAAAGGTCTGATCCAGCTGCACAAGACCAGGAGCTTCAGGAGTGGAACCACAGGAACTATATTTACAGGCAAGGCAGTACAGGAGACAACATGTGGGGAGTTCAGTGCAGTGGTGGTGGAGGTTGCAGGTCATGCTTACTACAGTGGCGTGGCCAGTTTCACTCTGGAGAATGAGGATGCCCTGAAGAATGGCTTCCTCCTCCGATGAGTCTGCCTAAATGCTAAAGCAGAGATCTAACAAGCTGGAATAAGTAAAAAATCTGTGTCCTTTTGTTATCATGTCAGTGCATTTCCATGTTTCATCAAGGATCATAACTGCTGGGATGCACATGCTAGCTCTGTTTCATATTTCCTTTGTCAGAAGATGGCAATTACATTTTGTAACAATTAAATCATGTGCACAAGTTGGACAGAACAAGGCCCACTAACTAGttacacatttataattttGCAACTCTTAATTAGTTCCTGTATCCACTGTTTCCCTGTTTGTGGAGATATTTATTAGTCAGcaggttttctgccacaggagtCTTCATAACAGAGGAAGTTTCCATTTTGCACTTTCTCAGTAATGTGAcaagcagaattttttttgtctcattgactttatgaaagagaaaaaacaaaggtTGGTGATATTTATATGTGctataacatacactatatggccaaaagtttgtgcacacctgaccatcacccccatatgtgcttttgaacatcccagtcaagatttagtcccctctttgctTTCATAAT

Function

GO: NA

KEGG:

id description
K18384 L3HYPDH; trans-L-3-hydroxyproline dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345697 lncRNA upstream 168716 8126021 ~ 8127898 (+) True G291769
XR_004580121.1 lncRNA upstream 348583 7945952 ~ 7948031 (+) True LOC117599748
TU345543 lncRNA upstream 459534 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 459534 7833330 ~ 7837080 (+) True G291644
TU345535 lncRNA upstream 514606 7777629 ~ 7782008 (+) False atp5mpl
TU345853 lncRNA downstream 8503 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 164098 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 170208 8470947 ~ 8473728 (+) True G291976
XR_004580077.1 lncRNA downstream 188230 8488969 ~ 8534500 (+) True LOC113545369
XR_003404603.2 lncRNA downstream 188230 8488969 ~ 8534500 (+) False LOC113545369
XM_026944387.2 mRNA upstream 106033 8173162 ~ 8190581 (+) False esr2a
XM_026944385.2 mRNA upstream 106033 8173162 ~ 8190581 (+) False esr2a
XM_026944388.2 mRNA upstream 106033 8173164 ~ 8190581 (+) True esr2a
XM_026944386.2 mRNA upstream 106033 8175511 ~ 8190581 (+) False esr2a
XM_026944502.2 mRNA upstream 170951 8088687 ~ 8125663 (+) False jag2b
XM_026944480.2 mRNA downstream 145577 8446316 ~ 8459728 (+) True clic5b
XM_026944651.2 mRNA downstream 249203 8549942 ~ 8557745 (+) True LOC113545337
XM_026944368.2 mRNA downstream 299672 8600411 ~ 8605983 (+) False wdcp
XM_026944369.2 mRNA downstream 299886 8600625 ~ 8605983 (+) True wdcp
XM_026944500.2 mRNA downstream 335711 8636450 ~ 8704985 (+) True atad2b
TU345691 other upstream 222177 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 407778 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 408534 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 409015 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 411898 7884645 ~ 7884716 (+) True trnaa-cgc_6
TU345969 other downstream 187908 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 590929 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 692774 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 773289 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 1603011 9903750 ~ 9950731 (+) True G293016

Expression Profile