RNA id: XM_026944403.2


Basic Information

Item Value
RNA id XM_026944403.2
length 1837
RNA type mRNA
GC content 0.45
exon number 5
gene id chgb
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8987232 ~ 8990529 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAATATTATATATCTGCGGTGTTTGAGCGCTATTCACGGATATAAAACGGGCTGCTTCACGGGCGCTTCACCGGGCCGTGACGCAGGTCTCGCAGACTCCGCCCACTCGCGCGGAGTCCTGATCGTTCCTGCGTTGCTCCAACATAACGCGTCTCGCGCGCGCTGTGGTGCAGGCAGGAGCTCGGCTTTTTGGCTCTTTGATATTTCAGATCCGAGCTTTCATTACCGTTGCAGAACAGTTTTTATCATGAAgcttctgtctctgtttgtcgTGACTTTGTCCCTCTTGGCAGAAAGCAAGTCTTCACCACTGGGGCAAGATGGCAGGAAGGAAGACCTGCTCATCCAGTGTTTGGTTGAGGTACTTACTAAGGTAGTGTCCCAACCAGATGGCACTTCTCTGCAACCAGAATGTAAAGACATTCTTCAAAAGCAAGGTTCCAGCCACACTTTGCTTATGAAAAAGAATGAAGAAGAAATGCTTCCTCTAGAGCAAGATGAGAAAAGACAAGAAAGGGAATCTAAAGCCAGGGCACAAGAAATCATTAATGAACTTCTCAAGACAAATGAGGAAAAGCGTGAAGACATGGATGAAGAACGGAGCCAGGAAGAATTTCCAAATTACTATAAAAGACACCATCTTTTAACAAGCAAAGAAAAACGTGAAGACCCAGACAATGAGAGGAGCCAAGAGGAATTCCCTCAAAAAAGACACAGTTTACTTTCCACAAAGGAGAAGCGTGAGGATCAAGATGAAGAGCAAAGTCAAGAAGAATTTCCGACTTATGAGCAGAAAAGGCACCTTTTCTTGACCAGCAAGGAAAAGCGTGATGATCCCGACTATGATCGAAGCCAGGTAGACTTCCCAAGCTATGTTTATAAAAGGTATCATGATGAAGACGGGGGGACAGAGAAGCAAATTTGGAAACCtcacaaataccattacaaacggTATGATGACTCATCAAATGAAGATTTTGCAGAACTAAACTCTCAAGAGAAGAGGTTTGAAGAAGATGAGAGTGCTAAACAATACTGGAATCCCATTCAACGATACCACCACAAGAAACACCACAAACATGATGGTGATTCCTCTGATGAAGAAATGGAGagtgaggagaaagagaagagggTCTCATGGACCAGAGAGTCAGAGGAGGGGTCCGAGGAAAGTGAAGAGAGGGAAAAACGAGTTTGGAAGCCAAGCTATAAGAACCACCACATGAAACTCTTTCACAAGCAGGGTAAAtttgagaatgaaaatgatgcaaaCCTCCATCACTCACTGGAGACTTCCAAGCGCCGTTCCcctgaggaagaagaggaagaactAATTGCCCAAGAGCTAAATGAAAACAAGCACCATTACGACAGCCAAGAGCAGCAGAAAAGGCACCACAGTGATGCCGAAGAAAAGAAGCAGGAGAAAGAGGCAGAGCTGAGATACCTGACCAAGAAAAGAAATGAGCTGGAAGAACGTCTGCTGAAAGAGGGTGAGGTTTATGACAAGCGCAATCCCTGGATTTACCGAGGATACTATCATCCAGCCTGGTATAAGCGGATTGCCGAGGGAAACGAAGGTCTTGTGGGTCCCTCAAAGAAACTTGAAGAGCTTGTTAATGCCCTCAGATACAAGATTGGTCTACTGTCTGAAAAAGAGCCAACTGAAGGGGAAAAGGCTTACCTCCACCAGAGGGCTCTTACTCCAGAAGAGctGAAAGAACTTGAGAAACTTGCCTTTGTGGAGCAACAAGCACAAATAAACTAGCCTTGGTTGAACGAGAAGTGAAGCACCCATACAAGAAACACCTGACACCCCCCTTATTATGACTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346095 lncRNA upstream 281988 8705054 ~ 8705244 (+) True G292102
TU346063 lncRNA upstream 401330 8584219 ~ 8585902 (+) True G292074
TU346061 lncRNA upstream 403755 8582950 ~ 8583477 (+) True G292072
XR_003404603.2 lncRNA upstream 452732 8488969 ~ 8534500 (+) False LOC113545369
TU346720 lncRNA downstream 417963 9408492 ~ 9408714 (+) True G292654
TU346709 lncRNA downstream 424022 9414551 ~ 9415576 (+) True G292643
TU346871 lncRNA downstream 563908 9554437 ~ 9554807 (+) True G292765
TU346877 lncRNA downstream 597171 9587700 ~ 9587903 (+) True G292771
TU346862 lncRNA downstream 621459 9611988 ~ 9612612 (+) True G292756
XM_026944503.2 mRNA upstream 40231 8940392 ~ 8947001 (+) True gzf1
XM_026944500.2 mRNA upstream 282247 8636450 ~ 8704985 (+) True atad2b
XM_034313707.1 mRNA upstream 285781 8636450 ~ 8701451 (+) False atad2b
XM_026944368.2 mRNA upstream 381249 8600411 ~ 8605983 (+) False wdcp
XM_026944369.2 mRNA upstream 381249 8600625 ~ 8605983 (+) True wdcp
XM_026944361.2 mRNA downstream 46582 9037111 ~ 9041907 (+) True bmp2b
XM_034313446.1 mRNA downstream 46582 9037111 ~ 9041907 (+) False bmp2b
XM_034313447.1 mRNA downstream 46582 9037111 ~ 9041907 (+) False bmp2b
XM_026944484.2 mRNA downstream 83499 9074028 ~ 9179173 (+) True LOC113545247
XM_026944485.2 mRNA downstream 83499 9074028 ~ 9179173 (+) False LOC113545247
trnak-uuu_18 other upstream 95492 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 477749 8488647 ~ 8509483 (+) False LOC113545369
TU345691 other upstream 912795 8043399 ~ 8074437 (+) False nudt14
trnaa-cgc_7 other upstream 1098396 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 1099152 7888009 ~ 7888080 (+) True trnaa-ugc_18
TU346212 other downstream 2984 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 83499 9074028 ~ 9160901 (+) False LOC113545247
TU347160 other downstream 913221 9903750 ~ 9950731 (+) True G293016
TU347333 other downstream 1168426 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 2028387 11018916 ~ 11024973 (+) False G293528

Expression Profile