RNA id: XM_026944412.2


Basic Information

Item Value
RNA id XM_026944412.2
length 3092
RNA type mRNA
GC content 0.50
exon number 15
gene id taf4b
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6661880 ~ 6676354 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGTCCATGTTTCATGTTCCTTCCGACCCCATATACTCGTAATTCCCACTTCAGAAGTGGGAAGTAGGAGAATTCCGGtagcacgtgaaggcagcataaGTATCAGCTGATTGGTGAAGAGGCTGTGATCAGCTGACTGAGGAGGCGGGTTCGTTTAAATTCCGCACTGAGGACGCTAATATTGGGAGTCGGTTCACACTGACACGAATGAGGTGTTAAACTAACCACCCAACCAACCAAGCGAGCCAGCGTGTGCTACTGACATGGCACGACGCTGTTTGTGTTATAAATTTGTGTCATGTCCGAAAGCGAAAGTGCAAACGACTTTCAAAAGATAGATGATTCGGCAGAAAAAGCGCGTGAAGCTCCAGAAACAGGAGCCACTCCAGCAGCACCGTGCACTCAGGTATCAGAGAAACACAATGCACCTGATGCCACCAGTGCGTCTCACACTTCAGCCAAAGACTCAATACTTACACAAGAAAGTAAAACTCAGTCACCAGAGCCATGTGAGGCACTTAAAAATCATCCTGCTGAAGCTGAAGCTCCTTCCTCGAGCATGCTCCCCAATCCTGTGACCTCCTCTCTAACATCTGCCTCCATGGCTCCAACACCAAAAGTCATAGTGAGCTGTGCGCCTGGCAGATCTGCCACGCCGCTGGTGGTGGGGGCGAGAGTGGTGTCGGCAGCTATTTCAGCAGCCGGGGCCAGTGGGCAGACCTCAGCTTCACATCCTGGAGGACTCACTGTGATGTCTAACCAGGTCAGACCTCCAGCAGTGACCCAAGCTCCTCTCCGAGCAGCGATCATGGCTTTACCGAGGGCATCGAATGTAACACAGCAGAATGTAACAGTGCCACGGAGTCCTCAGACTACATCTCTCCAGCTACCTGCCAACTTCCAGATTCCACAAGGTATGGTTTTAATTCGCAGTGACAGTGGGCAGTTGATGTTGGTTTCCCAGCAAGCTTTGGCTCAAGCACAGGCCCAGGGCTTAGTGCCTAAATCATCCAATGTCACTACAACAGTAAGACCACAGGCCTCCCAGGCAACAACCACATCTATCATCAGAGTCTCTCTGCCATCTTCATCTACAACGGTAGCCACCTTAGTAAAACCCGGCTCCTCGGCAGCAAAGGCTGTTCTGAAGCCCAGCTCCACCACGGGCACTGCCACAATCAAACCCACCACTACAGCAAGCACTATTATTAAACCCCCCTCAGTGTTAGGGACTGGCCTTAAGCCAAGCTCCATCACAGGGCCCACCGTCATTAAAGCTCCCTCTGCTCAGAAACCTCCGATAAGCACCACAACAGCGACCATAAGCCAAAGGACCATCACTGGCACCAGTGTTCCCTCTACATCTGTAGTGAAGtCTATTGGCAAGGCATCACTTTCTTCATCAGTTACTCAAAGCAGTCGCCCAGTTGGCAGTGGCCCTCGAAATATCTCCCCGAATATTCCCATCaaagccagcagcagcagcaaagtCTCCACCCCGGTCACTGTCACAGCCGAGACACTGGAGAatgtaaagaaatgtaaaaattttcTGATCACTCTAATGAAGCTGGCATCAAGTGGGACCCGCTCACCTGACATGGCACAGAATGTTCGAGCTCTGGTCAAAGACCTGCTGgATGGACGACTGGAAGCTGAGGAGTTCACTGAAAAACTTTACATGGAGCTGAAATCATCCCCCCAACCGTACCTGGTGCCCTTTCTTAAAAGGAGCCTTCCTGCTGTGCGTCAGCTCACACCAAACTCTCAGCTCTTCATCCAGCAGTGTGAACAGCCCAAAGCCTCCTCTTCATCCACAGTCAGCAGCAGTGCCCAGAAACTCAGCCATTCTTCCTCCACCACTATCTCTCAGCCTCTCCGAGGCAGTGTACCAGCCGGACCCCCTCAAATGGTGATCCAGCAAACCAAAGGAGTGATTGTGGAGCAAAGTGTGACCTCCTCACCCCGTGTTGTGTTGCCAGTGCAGAACCACACACAGCCCAAGCATCCAGTCATTCAGACCAACACACAGGCAGCAGgagcttTTAGGAAGCAGTATTCTCTCCAGGCATCTAAAACCCCCTCTGGACCAACTCAAGCAGCACAAACATACAATTTCAAGGACAGCACCTCAGGCTCATTCCGCGATGATGATGACATAAATGACGTGGCCTCCATGGCGGGTGTTAATGTGAATGAGGAGAACGCTCGCATTTTGGCGTCCAGTTCAGAGCTGGTGGGCACGGTGGTGCGCTCATGCAGGGACGAGCCCTTCCTGCAGACCACAGCACTGCAGCAGAGAGTGCTTCACATTGGTGGTTCTCTGGGTGTCGCAGAGGTGAATCAAGATGTGCTTGGGTTGCTTTCTCATGCCACACAGGAAAGACTTCGAGTTCTGCTGGAAAAACTCACTGTTATAGCACAACATCACAGTATCTCTTACAGGGATGACTGGCGGAACATTCAGACCAGTGACACACGCTCCCAGCTAAAGTTCCTGGAGCAGCTGGAGAAAGTGGAGaaacaaaagagagaagaggaggagagagaaaccCTGCTGCGCATCGCTAAGAGTCGCTCGAGCAGTGAGGACCCCGAGCAACTTAGGCTCAAACAGAGAGCGAAAGAGATGCAGCAGCTGGAGCTAGCTCAGATGGAGCACAGAGATGCTAACCTGGCAGCACTTGCAGCTCTCGGGCCTCGTAAGAGGAAACCTCTGGAGGCTTCTGGCTCTGGGACTAACCAGGTTCTGGGTTTACGTGCACAGAGAACTGCTCAAAGGGTTCCAACACGTGTGACTTTCAGAGATCTGATCTTCTGCATGGAACAGGACCGTGCACTTAGACACTCCCTTACACTCTACGATGCTTTCCTACGGTAGAAGTCCTTCAGTTTAGTTCTAAAATCGCCTTTTACATGTCTTATATAGAGGACTAATTATTACATCTTACATTAAGGACCATATCATTTCTGGATGAaaatttttctttctatctagATCATATTAGTGTTAGTTGTTAAAATTTCAAACTCTTTATTTTGATCCGTGCAAATATTGATTGAAATATTTTGGCATTTGACTCTGCTAttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344600 lncRNA upstream 238914 6422672 ~ 6422966 (+) True G290879
TU344584 lncRNA upstream 319340 6342263 ~ 6342540 (+) True G290863
TU344375 lncRNA upstream 423964 6237714 ~ 6237916 (+) True G290699
TU344338 lncRNA upstream 501840 6135952 ~ 6160040 (+) False b4galt6
XR_004580162.1 lncRNA upstream 842814 5815909 ~ 5819066 (+) True LOC117599801
TU344666 lncRNA downstream 37573 6713927 ~ 6727514 (+) True G290935
TU344782 lncRNA downstream 158053 6834407 ~ 6834698 (+) True G291037
XR_004580109.1 lncRNA downstream 254015 6930369 ~ 6933860 (+) False LOC117599731
XR_004580108.1 lncRNA downstream 254021 6930375 ~ 6933860 (+) False LOC117599731
XR_004580107.1 lncRNA downstream 254024 6930378 ~ 6933860 (+) True LOC117599731
XM_026944352.2 mRNA upstream 1296 6640967 ~ 6660584 (+) False kctd1
XM_026944351.2 mRNA upstream 1296 6649383 ~ 6660584 (+) True kctd1
XM_026944583.2 mRNA upstream 31906 6622927 ~ 6629974 (+) True aqp4
XM_026944591.2 mRNA upstream 157749 6461728 ~ 6504131 (+) True cdh2
XM_026944489.2 mRNA upstream 431328 6214741 ~ 6230552 (+) True dsc2l
XM_034313819.1 mRNA downstream 15280 6691634 ~ 6699817 (+) False LOC113545329
XM_026944644.2 mRNA downstream 15282 6691636 ~ 6699817 (+) True LOC113545329
XM_026944379.2 mRNA downstream 120985 6797339 ~ 6807341 (+) True si:dkeyp-72h1.1
XM_026944567.2 mRNA downstream 157032 6833386 ~ 6848533 (+) True tnfaip2a
XM_026944427.2 mRNA downstream 174002 6850356 ~ 6868031 (+) True LOC113545215
XR_004580141.1 other upstream 860187 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 1682480 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 336388 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 913014 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 1206864 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 1208291 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 1211174 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile