RNA id: XM_026944413.2


Basic Information

Item Value
RNA id XM_026944413.2
length 1303
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC113545207
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10136989 ~ 10140336 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTAGTAGATCAGCTCATCTACACACGTCTGCCAGACGCTCGAACACACCCCACGGTCACATGACTCAGCTACCTGTCTGTGGAGCAGGCGAAGGCCTAGATGATATCCTACTGAACTTTTTCCAGCTTTTTCCAGCTATGAGGGACAGACTAAGCCATCTTCAGACATTCTCAGCAGCAGTCCAGCATTCATTGAAGGAGCGGCCTGAAGAACCTCCTCAGGAACATAACACTGACCCTGAGATGGAGGCCATATTTAATGAGGCTAATAACATTCGCCGTGACATTCAGCTCATTCTTTTGGATGTGAAGCATCTCGAAGAGCAGAACTCTCCTGTTTGGAATGAGCTACCAAATTCTAGCACTGTGAAGCACGACTCTAATGCCATTGCTGCTAGCATCAAGTCCCGTGCTAAAGACGTGCTTGCACGTCTTCGCAGTATGGATATGCATGCTAGCGAGCTGGAGAAAAAGCATGGGATCAACAGTGCCCTTTCTCGAATCGCACGAACACAATATGCTGGTTTGAGCAGCAGCTTCCGTGATGTGATGATGGAATACAACAGGGCAGAGATGAGCCACAGGGAAATGTGCAAAACCCATATCCAGAGGCAGCTGGAGATTGTGGGGCGAGAGGTGACAGGTGAGCAGATTGAGGAAATGCTAAGTAATGACCAGTGGAACATCTTTAGTGAGAACGTTGTCACAGAGGGGAAAACAGCACGATCTGCCCTCAGCCAAATCGAAAACCGACACACGGAGCTGCTGGAACTGGAAAGCCGCATAAGGAGCATCCATGAAGTGTTTCTAGACATGGCTATGCTGGTAGAAGAACAGAGCAACATGATAGATTACATACAGACAAATGTCCAAAAAACTGATGCAGATATGAAGAATATGCTGGTAAAGCTTGAAAAGGCCAAGAAATATGATAGAAACAACCCCTTCAAGAAGATCTTTTGTAGGAGGCGTTAATCAACGCGTAACTGCACTGTTTATAATTTTTGGACTTTGCTTGCTGACTGTGACTTTGTTGTGATTTTATTGTGTACTGTTTAagagctgcatttttaaaaatttgctttGATATGATATATTAAATGGAGGATAAAATGCCCACATTGACTGTAGCTAAGATATTAATATCGTAGATGAGTTTGTCTTTTGAATAAATcaaccaattttttttatatgtcagGCTGTATCAATGATtttctggattaaaaaaaaaagtttttcctcTCAAATATTTGACTATGTATGTGCGAATTTTGgaggtaataaataaatgatgaatgtTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347278 lncRNA upstream 72978 10063765 ~ 10064011 (+) True G293110
TU347253 lncRNA upstream 98634 10036451 ~ 10038355 (+) True G293095
TU347065 lncRNA upstream 268380 9868149 ~ 9868609 (+) True G292929
TU346860 lncRNA upstream 520398 9613425 ~ 9616591 (+) True G292754
TU346862 lncRNA upstream 524377 9611988 ~ 9612612 (+) True G292756
XR_004580103.1 lncRNA downstream 58513 10198849 ~ 10210998 (+) True LOC117599717
TU347561 lncRNA downstream 396628 10536964 ~ 10537640 (+) True G293350
TU347551 lncRNA downstream 411905 10552241 ~ 10553007 (+) True G293345
TU347592 lncRNA downstream 420461 10560797 ~ 10561016 (+) True G293380
TU347623 lncRNA downstream 469290 10609626 ~ 10609846 (+) True G293411
XM_026944512.2 mRNA upstream 15689 10091369 ~ 10121300 (+) True exoc2
XM_026944678.2 mRNA upstream 111065 9945790 ~ 10025924 (+) True gmds
XM_026944679.2 mRNA upstream 111065 9945790 ~ 10025924 (+) False gmds
XM_026944680.2 mRNA upstream 111065 9945791 ~ 10025924 (+) False gmds
XM_026944627.2 mRNA upstream 195594 9924503 ~ 9941395 (+) True mylk4b
XM_034313908.1 mRNA downstream 18691 10159027 ~ 10170739 (+) True LOC117599798
XM_034313648.1 mRNA downstream 30456 10170792 ~ 10186608 (+) False LOC117599727
XM_034313652.1 mRNA downstream 30456 10170792 ~ 10186608 (+) False LOC117599727
XM_034313651.1 mRNA downstream 30457 10170793 ~ 10177835 (+) False LOC117599727
XM_034313645.1 mRNA downstream 30580 10170916 ~ 10186791 (+) True LOC117599727
TU347160 other upstream 186258 9903750 ~ 9950731 (+) True G293016
XR_004580138.1 other upstream 976088 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 1139993 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 1245249 8891668 ~ 8891740 (+) True trnak-uuu_18
TU345969 other upstream 1627506 8488647 ~ 8509483 (+) False LOC113545369
TU347333 other downstream 18619 10158955 ~ 10161751 (+) False LOC117599798
TU347771 other downstream 878580 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 1003551 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 1004603 11144939 ~ 11145012 (+) True trnai-aau_2
trnai-aau_3 other downstream 1005655 11145991 ~ 11146064 (+) True trnai-aau_3

Expression Profile