RNA id: XM_026944414.2


Basic Information

Item Value
RNA id XM_026944414.2
length 6310
RNA type mRNA
GC content 0.44
exon number 23
gene id ralgps2
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4453316 ~ 4557487 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttaatttttttatgcatgAAGCGCTTGTTTAGCGTCAGGTTTGTAATTCCGCTCGCGCTATCCAGCAGGTCTCTGAGACTGACACTGAGGCCTGTGAACgcgctctttgcaGGAAGCGCGTGCACCGAACGGCAGCCGCCCGAAGCTCCGCCCCCCTCCGTCCCCGCAGTTCAAACAGCTCACTGCGCTCTCAGGACACTTGTCTTCAGCTGGACTCTAATAGGATTTGTTTTGTGTCCAGATCCTCCAGAGGAGCGCGAGCGTCCCAGCCGGAGCAGGAGGTTTGTACTGAAGACCTGCAGTGGAAATATTCACAAGGCAAACATCGTACTGAGTGGCGTGGGCAGAACAGCAGTCAGTATGCTTATCTGACATTGACTtgactgcCAGGCAGGCAAACACCAgcagatgaggatgatgatgatgaaactaTTGCGCTAGTGCCAGATGGTTTGGGAATGATGGACGTCCCTAATGGCCAACCCAGTGTCTCCACTGCTGTCACCTCAGAGAAGAGCAGCAGTTCAGAGTCTCTGAGTGAGAAGGGCTCGGCTGAGCTGAAGAAAAGTTTCGATGCTGTTGTCTTTGATGTGCTGAAGGTCACACCAGAGGAATATGCAgGTCAGATCACACTTATGGATGCTCCAGTGTTCAAAGCCATCCAGCCTGAGGAGCTCTCAAGTTGTGGCTGgaacaaaaaagagaagcaCAGTTCAGCTCCTAATGCCGTGGCTTTCACACGAAGATTCAATCaggtgagtttcTGGGTGGTGCGGGAGATTCTTCATGCCCAAACTTTGAAGATCAGAGCTGAGGTTTTAAGTCTCTACATCAGGACAGCAAAGAAACTGTGTGACATGAATAACCTCCATGCAGTAATGGCAGTGGTGTCAGGTTTACAGAGCGCTCCTATTTTCAGACTCACCAAAACGTGGGCTCTGTTGAGTCGTAAGGACAAGGCTACATTCGAGAAACTGGAGTATCTGATGGCGAAAGAAGACAATTacaagagactgagagactaCATCAGCAGCCAGAGTATGACCTCTTGCATACCGTATCTAGGTATGTATCTGTCTGATCTCACCTACATAGACTCGGCGTATCCCTCCACCGGCAGTATTCTGGAAAATGAGCAGAGGTCCAACCTGATGAACAACATTCTGAGAATCATCTCAGACCTGCAGAGATCCTGTGAATATGATATACCTGAACTGCCTCATGTCCAGAACTATCTCAACTCAGTTCACTACATTGAGGAGTTACAGAAGTTTGTAGAGGATGACAACTACAAGTTGTCTTTGAAGATTGAGCCAGCCACAAGCACACCTCGTGCAACTGCCTCTAGAGAAGACCTCGTAGGTTCGGATGCATCTGGTTCGCCCTTGTGTGGTCGTCGTGGCAACTCTGCTGACGGTGGCCTGCCTAAAGTCCCGGGTACTCCGCCTTCCCCTCGAAACCTTCTACCCTATGGACACAGGAAGTGTCACAGCCTGGGCTACAATTTCATTCATAAGATGAACACAGTGGAGTTTAAGAGTGCTACATTCCCCAACGCTGGATCCAGACACCTGCTGGACGACAGTGTCCTGGAGAGCAATACACCTACACGAGGACAAGCAGAGAGCTCCACTCTGTCCAGTGGCATCTCACTGGGAAGCAGTGAAGGATCTGAACTCAGTGAAGAAATGTCTTGGCCTGCATTTGAAAGGACACGTTTCTACCACTCTCTGGGCCCAGTGACCCGAGTAGGCCGCATCTCCTGCAGAGGAGGTCTCAGGCCCAGCAGctcAGCCGAGTCTGAGGAGCTGGCGGTGCACCTGTACCCTGGAGCAGTGACCGTCCAGGGAGTGTTACGCAGGAAGACCATCCTAAAGGAGGGGAAGAAACCTACTGTGGCTGCATGGACTAAGTACTGGGTGGCGCTGTGTGGTACTCAGCTCTACTATTACACTGCCAAGTCTCTCAAAGCCACTGAGAGGAAGCATtttaaGTCGACCTCGAGTAAGTGTGTCTCAGTGGTGGGGTTGATGACCATGATGGCAGATGACCCAGAGCATCCCGACGTCTTCCTGCTGACAGACTCTGAGCACGGAAACTCGTACAAGTTCCAGGCAGGGAACAGAATGAACGCtttgctgtggtttaaacacCTCAGTGCAGCATGTCAAAGCAACAGACAACAGgttcCAGCAAATCTAATGTCCTTTGAATGAAAGGTCCAATCAGATGGCAAAAGAACTATTTAAAAGGCGGGTGCTAAAAGACAGGTGAGAAGAGGTTGAGGAGTGGGGGAGCAGGAAGAGAAGAGGAGTGGAGAGAGTAACTATTTTACAGTAGCTTTTCCACTGCCATCACCCAGCCTGAGTCTCACTGCAAAGCCCTCCACCACCACTGCCTTACAGAGTGGAGCAAgagtcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggtgtagagCCCTCTCTCCTCTgccaccactttttttttttcccactctcTTCCTCATTGTATTGGCACTCTCTCCATTACAATCTCTTTCTCTACCAAAGTGAGGAAATCTGTGTCCCTCTTCCTCAGAACAACTTCTGTTCCTGCGTCTCATCCAGTGCACCAACTGGATATCTGGGTCttaactccacacacacacaccttcacttcttttctttttttatttatttttttatttcttatttttttttattttatgtcctGTTTCCTCCGTTCACGTGGCTGAACAGCTGGGCCCAAGCACCATCCACTAGTGGAGTGAAAATCTGAACTCTTCTCCTCTTCATGCCTCGCACATACCACCAGGACACTGCAGGACCTTCTCCTTTCTACTAAGGAGACTGTTTTTAAATGGGGCTGCCACATTTAGGCCAAATCcccgctctctctcactctcactctcgcCCATGCACGCACATCGTCGCACATGTTGATTCTGTTCATACACTTGAGTTGGGCTCAAGCAAGCATGACACAAGATTTTCCAAATGCAGGTTTAACTGCAAGGAGTGGAAGTGTCTCATTTGTTATAACCATTTCAACACTTTGAAAAGCAACCAAAAAAAGGGCTCTGATACTAAATGAATTCCACATGAAAAGTATTCCCGTAAAACTCTTGAATATTTGCATCACCTTTTTATTATCTTAGAGATTTGTATAAATTACACCtgcatgcactcacacacatacacgcatagTCACATCCAGTTACACAACTCGAGCATTAGGGACAAAGATGATGAATTGTTTTGTAGTCAGAGGCACTTAAGCCATCTGTCTCAGAGAGATGGTTTGTGCGAGGGGAAGAGAGAGCGAACGATGAGGAGGGTTaatgaagaggaagaaagcAAATGTAAAAATTGAGTTTAATTACCCATGTTTGGGTGGGGGAGTATGGCACAGTGTGCACAGGGGTGGGTGGTTGGGTGGGTGGTTCGGGTGTTCGGGGTTTCTACAGCAGGTGCTCTTTATGGTACGACTGAAGCTGAACAAGCCTCTAAACAGAGGTCATGTGTACAGTCTTTTTTTATCTCTACTCTCcttctttcactctgtctctctcttccccacaagttaaaagttaaaagctAAAATGTGGGATGTTTCCtaccaggacacacacattttcttatttacttGAAAGCTGTGAATGTCAGTTGGATTTTTGCCTGTAATCTCAGTGGTGGTTTAACTTTATTTCCTTACACCAGTAGTTTGTAATAGCAGATAGGATTAAAAAATTGAGACTGTTAGAGGTGGGAGTGGCTgcatgtgtttgaatgtgtttatCAGTAACtgtacaataacaaaaaaaattcaaagttcATTACAAAGAAGCTGTTCAGGAGCCATTTGCTTttggttttttatttagtttacaagttttgtttattgtttagtttatttttatttgcagtaTTACAGTAGGTTATGTAGGTTCCATTGCACTGGTCTTAGGATGTTTTAATTGTctgttacattttgttcattctttccatttttaatttttgatgtgttttaatgtgctttgtgtttgattttattttggacGTTTTTGCCTATTGTAAGTGTATTCAGTTGGGAGTTTACTTCTACAGCACATGATTACACATTGTGTTTAACATCAGGTTAAGGCTAGACTGTGTAGAGGAaggatttttaaatgcattatgtACTTCAGACTACCATGTAATCTATAGAAGCCACCCACTGGAAGGCTTCCCTGTCATGCAGTCTAGTTTTACACAAGTGGATCCAGCTTTATAGGGAACAAGAGAGGAGGTGTGATAAGCTTTGAACAAATGAAGAGCATTGCAGTTCAAAGGAGACATGAACTATTAGTTCAGAACGGGCAGATGAAGCCGTTTACCATCCTTCCTTTTCATGTTGTTTACTTTGCTTTATATAGGTGTTTTCTTTTCCCAAACATTGGCTTTCTCCTCCAGTCACCTGACTGTTTCTTCTGCcaacaatattttaatgttgcCTCAGATCCTGGTTCATATTATAGTTTACAGGCTTCTGGAGAGTGGTTCTGCACGTGATCAAAATTGGtctaattttctaattttagtCGAATCTCTTGTCCAGCACTATTAGAGAAAGAAGAAGTGAATTGAACAGTGTTAGAAGCTCACCATTGCGACTTAAGTTTACTTGCGCTGTAAAGTGCAGTCATCAAAGGCacgtttttgttgtttttgtttgttttactttttaaatatccTTCGGGATTGTGCTGGACCTAAAATAATGCTCTGTGTCCAAAATAATGAGAGTGACATCTTAGAAGTGTTTACAGTATAACGTGCCACAGATTTGAGCTGCTCTCTACGGTATTGAAGCGGAGTACGTTCTTTGAGTTTTATGAAAGCACATTGGGATTGTTTGAAAAAGATATGAATTTAGCCACACAAAGCAGAGAAAAAAGTGTTTATGCACTAAGGTTGTCACATATTTCCTTTATAAGAAGCCATATTGGCTCAAATCAAGAGTTTGCATAACACAGTGTGGTTTTGGCTCAGGTTTTGAGGCAGGATGAAGTCAGTCTGCCGTGATAGAGCAGCCATTATTGTTTAGGCAGGGAGCTTGTGCGTTATCTTCGGCATGCGGCTGAGTGGATTTGGCATCACTGTTCTGAGCTTGCGGTATGTCACTGAACGTCAGTACGCACTTTCATAGCCAGAGGCCAGTGAAGAACGTGTTGGGTTAGAGTTTTATTTCCTCAGACATTCATACGGACTACTGCAAGGTGGGGAAAAGGGAGAAAAGGGaagcacagtgtgtttgtgcgcaTAAAGCCCCTCATTTCACCAAAGTGCCGGGATTTAGCGCTATTTGAAGAGCTGACCTTTTCAACAAAGTATGCCATATGGTCAAACCGTCACACATTTTGTTATTGTACTTTCCCTTCGTCTCTTGCATTGATTCTTTAAATGATTTTCCATCAGGCCTGAACTTAACATGCTTTAAACGGTTGAAATGGAAAAGCTAATGGGCAGACCTGAACATCAAATACACACTGCAGCAAATCATAGTCAGTTGTGCAGAAAAAGGTGACTGGAGTGACAAAACTCACTGTAACTCCAACTGTCTTGTCTTTTTACTTGTGGCTTTCTGCTGCCTGTCTCTGATCAGATACATGAAATGGTACTGAGACGGTGGTTATATAGGATTAGATTCAGAAATCTGTCCAAATGCATTTGGTTAATGGATGTTACTGTACAGCAAAATAACCAGCTCTCTGAGTTCAAGTTCTGGAGTAGAATGggatcatttctttctctctgtgtgtattgtatgttgtattttttaatggGTTTTTCAGCCATTTACATTCTTTAAAACACCCTCTGAATGTCACACATGCATTATAACTTAACTAACacggttattattattatatatatatatatatatatatatacagtatatcttttACAAATGCACAAACATCTGAGAGATTTTGCGGTTTTTctgtagtttttctttttgctcaACTGACCTTCATGGGATGGCGTGGAATATGGAGAGTGTCATTAAATGATTTCGCTCCGTGTGTCAGAGTGAATCGGTCAGTCGGGGACTGTTTTCGGAGATGTCCTTCTGTCCATCCCACCTGCATCCATTCTGCATCCTCCTCCGTTGTATCCAGCCTCCCTGTCCCATGGCCCAAGGCAGCGCTATGACCTCTGACTGTAGAGAGATGTGCTCTTGGGTTCCTGAAAGGACAAAACCAATAAACACGTGTGTTCCTTTTTCTAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K24023 RALGPS; Ras-specific guanine nucleotide-releasing factor RalGPS

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343335 lncRNA upstream 18526 4433235 ~ 4434790 (+) True G289831
TU342943 lncRNA upstream 90228 4345579 ~ 4363088 (+) True G289521
XR_004580081.1 lncRNA upstream 100515 4350748 ~ 4352801 (+) True LOC117599675
TU343090 lncRNA upstream 115017 4328848 ~ 4338299 (+) True trnad-guc_17
TU343083 lncRNA upstream 123044 4319461 ~ 4330272 (+) True G289619
TU343408 lncRNA downstream 49881 4607368 ~ 4608750 (+) False LOC113545190
XR_004580080.1 lncRNA downstream 66655 4624142 ~ 4627837 (+) True LOC117599674
XR_004580147.1 lncRNA downstream 147175 4704662 ~ 4798444 (+) False LOC113545162
TU343531 lncRNA downstream 173598 4731085 ~ 4731312 (+) True G289989
TU343537 lncRNA downstream 198019 4755506 ~ 4755735 (+) True G289995
XM_026944565.2 mRNA upstream 2394 4447647 ~ 4450922 (+) True LOC113545289
XM_026944692.2 mRNA upstream 20961 4425634 ~ 4432355 (+) True echdc2
XM_034313494.1 mRNA upstream 33483 4407768 ~ 4419833 (+) False LOC113545214
XM_026944629.2 mRNA downstream 3674 4561161 ~ 4581781 (+) True fam20b
XM_026944392.2 mRNA downstream 43568 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA downstream 43568 4601055 ~ 4609601 (+) False LOC113545190
XM_034313899.1 mRNA downstream 84306 4641793 ~ 4642356 (+) True LOC117599796
XM_026944657.2 mRNA downstream 259200 4816687 ~ 4822011 (+) True plpp6
trnad-guc_22 other upstream 103437 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 115342 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 119687 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 124413 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 125774 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 384464 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 384464 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 384464 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 384465 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 1177986 5735473 ~ 5801693 (+) True usp24

Expression Profile